BO34724.complete Sequence
1198 bp assembled on 2013-10-29
GenBank Submission: KX797225
> BO34724.complete
GAAGTTATCAGTCGACATGCGATTGGTGGAGTGCTTTATTCCCGCTTTTT
GTGGGCTCTTTGCTGGCTCCTGGGCGGACCACTATGGACGCAAGCCTCTT
CTCATGTGCTCTTTTCTAGGCTACGGCCTTCAGTATCTCATTTCAGCTGC
GATTGCCTACTGTGCCATGTACACCCAAGGTCTGGTCAGTCCCTGGTGGT
ATGTGCTATCCATCGTACCGCTCTCTTGCTTGGGAAGCAGTGTGACCTAT
TCCGTGGCTGCCGTCTGTTTTATTGCCGATGTCTCCGGCGGAAAAGTTCG
ATCTTACAGGATGATTGCCTATGAACTGGCCATATATGTGGGCCTACTCC
TTGGTAGCCTTGGTTCTGGTTATGCATACGAGGCCACGGACGCCTACATT
GTGTTCAGCATATCTGCAGTTTGCATTTTCACGGCTCTATTTCTGATGGC
ACTCCTACTACCGGAGAGTTTGCCCGCCAGAAATAGGACACTATCAACAC
CGACGACTGACACCAGTGTGGTTTCCATGCTGAAGAGTTTGTGGAGCACC
TGCTCGAAGCCTCGTGAGCACCAGAATCGCTTCATGCTCACTACCATCAT
GGTAGTACTCCTCCTCACCGCCTTTGTATCGGACGGCAGCAACTCTGTGT
TCTATAAGTTTATGAGGATAAAGTTCCATTGGACCGTAAAGCAGTTTACT
GAGTACGAGACCGTTGGCATTCTTGTACCCGCAGTGGCTGGTTCAGGTGG
AGTTCTCTTTATTTGGTCGCTCCGCAAGTGCACCAATTCGGCGATTCTGT
GGCTGGCACTGGTTTCCCTGCTGAGCCACTGCTCCAGCAGCCTGATGAAG
GGCTTCGCCTTGGAGAGCTGGCAGATATACGTGGCTATTGGGCTGGGCGT
TTTCAAGTCGCTTGTGAACCCCATGTGCCGCACCATGATCACCAATTTGC
TGCCGGCTGATGAGCGGGGCAAAATCTTTGCCCTGCTTGGTGTCTTGCAA
GCACTTTCCCCCCTCATATCTTCCACCTTGTACGTTGCGATCTACACCCG
TACACTGAACACTGAACCGGGGATTTTCAACGTGTTTAGCGCCTTCTTAT
TTGGCATCGGTATTATTCTGCTGGGCACGGTTTGGCACAAAAAGTCAAGA
AATCTCGTGTACTATGAGCCGGTTTTTAAAGCAAGCTTTCTAGACCAT
BO34724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:10:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8046-RB | 1167 | CG8046-PB | 1..1164 | 17..1180 | 5775 | 99.7 | Plus |
| CG8046-RA | 1560 | CG8046-PA | 394..1557 | 17..1180 | 5775 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8046-RB | 2325 | CG8046-RB | 469..1632 | 17..1180 | 5775 | 99.7 | Plus |
| CG8046-RA | 1878 | CG8046-RA | 411..1574 | 17..1180 | 5775 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9163703..9164027 | 632..308 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 9164082..9164274 | 310..118 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 9163073..9163262 | 966..777 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 9162847..9163004 | 1125..968 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 9163329..9163475 | 778..632 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 9164328..9164431 | 120..17 | 505 | 99 | Minus |
| 2R | 25286936 | 2R | 9162730..9162785 | 1180..1125 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:10:27 has no hits.
BO34724.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:45 Download gff for
BO34724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8046-RA | 411..1574 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:35 Download gff for
BO34724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8046-RA | 411..1574 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:35 Download gff for
BO34724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9163703..9164025 | 310..632 | 100 | <- | Minus |
| 2R | 9164083..9164272 | 120..309 | 100 | <- | Minus |
| 2R | 9164329..9164431 | 17..119 | 99 | | Minus |
| 2R | 9162847..9163003 | 969..1125 | 100 | <- | Minus |
| 2R | 9163071..9163260 | 779..968 | 99 | <- | Minus |
| 2R | 9163329..9163474 | 633..778 | 100 | <- | Minus |
| 2R | 9162727..9162784 | 1126..1182 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:45 Download gff for
BO34724.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5050232..5050289 | 1126..1182 | 94 | <- | Minus |
| arm_2R | 5050352..5050508 | 969..1125 | 100 | <- | Minus |
| arm_2R | 5050576..5050765 | 779..968 | 99 | <- | Minus |
| arm_2R | 5050834..5050979 | 633..778 | 100 | <- | Minus |
| arm_2R | 5051208..5051530 | 310..632 | 100 | <- | Minus |
| arm_2R | 5051588..5051777 | 120..309 | 100 | <- | Minus |
| arm_2R | 5051834..5051936 | 17..119 | 99 | | Minus |
BO34724.pep Sequence
Translation from 16 to 1198
> BO34724.pep
MRLVECFIPAFCGLFAGSWADHYGRKPLLMCSFLGYGLQYLISAAIAYCA
MYTQGLVSPWWYVLSIVPLSCLGSSVTYSVAAVCFIADVSGGKVRSYRMI
AYELAIYVGLLLGSLGSGYAYEATDAYIVFSISAVCIFTALFLMALLLPE
SLPARNRTLSTPTTDTSVVSMLKSLWSTCSKPREHQNRFMLTTIMVVLLL
TAFVSDGSNSVFYKFMRIKFHWTVKQFTEYETVGILVPAVAGSGGVLFIW
SLRKCTNSAILWLALVSLLSHCSSSLMKGFALESWQIYVAIGLGVFKSLV
NPMCRTMITNLLPADERGKIFALLGVLQALSPLISSTLYVAIYTRTLNTE
PGIFNVFSAFLFGIGIILLGTVWHKKSRNLVYYEPVFKASFLDH
BO34724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8046-PB | 388 | CG8046-PB | 1..388 | 1..388 | 2003 | 100 | Plus |
| CG8046-PA | 519 | CG8046-PA | 132..519 | 1..388 | 2003 | 100 | Plus |
| CG15553-PC | 521 | CG15553-PC | 93..521 | 3..388 | 697 | 35.5 | Plus |
| CG30344-PA | 507 | CG30344-PA | 125..490 | 3..373 | 584 | 32.9 | Plus |
| CG30345-PB | 496 | CG30345-PB | 114..468 | 3..362 | 530 | 30.3 | Plus |
