Clone BO34729 Report

Search the DGRC for BO34729

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:347
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG13674-RA
Protein status:BO34729.pep: Imported from assembly
Sequenced Size:445

Clone Sequence Records

BO34729.complete Sequence

445 bp assembled on 2013-10-29

GenBank Submission: KX794271

> BO34729.complete
GAAGTTATCAGTCGACATGAAATTCCTCGCCGTCTGCTTCTTCGCTGTTG
TGGCTGTGGCTGCTGCCAAACCCGGTATTGTGGCTCCTCTGGCCTACACC
GCTCCGGCTGTGGTGGGCAGTGCCGCCTACGTGGCTCCCTACGCCTCCAG
CTACACCGCCAACTCGGTGGCCCACAGCGCCGCCTTCCCAGCTGCCTACA
CCGCCGCCTACACTGCTCCCGTTGCTGCTGCCTATACCGCTCCAGTGGCT
GCTGCTTATACCGCTCCAGTGGCCGCTGCGTACGCCGCCCCAGCTGCCTA
TACCGCTGCCTACACCGCCCCCATTGCCCGTTATGCCGCCACCCCCTTCG
CAGCACCCATCGCCGCTCCCGTGGCTGCCGCCTACACCGCCCCCATCGCC
GCCGCTGCCCCAGTTCTGCTGAAGAAGGCAAGCTTTCTAGACCAT

BO34729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13674-RB 414 CG13674-PB 1..411 17..427 2055 100 Plus
CG13674-RA 414 CG13674-PA 1..411 17..427 2055 100 Plus
CG13679-RB 360 CG13679-PB 1..266 17..267 830 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13674-RB 559 CG13674-RB 65..477 15..427 2065 100 Plus
CG13674-RA 687 CG13674-RA 65..477 15..427 2065 100 Plus
CG13679-RB 489 CG13679-RB 66..333 15..267 840 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8218442..8218843 427..26 2010 100 Minus
3L 28110227 3L 8202934..8203189 27..267 795 88.3 Plus
3L 28110227 3L 8222536..8222651 83..198 550 98.3 Plus
3L 28110227 3L 8222475..8222532 37..94 230 93.1 Plus
3L 28110227 3L 8203128..8203186 230..288 190 88.1 Plus
Blast to na_te.dros performed 2014-11-28 14:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1061..1148 308..221 134 61.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6850 309..213 127 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6828 308..214 124 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6817 309..213 118 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2374 279..214 116 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2856 296..221 109 62 Minus

BO34729.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:48 Download gff for BO34729.complete
Subject Subject Range Query Range Percent Splice Strand
CG13674-RA 67..477 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:33 Download gff for BO34729.complete
Subject Subject Range Query Range Percent Splice Strand
CG13674-RA 67..477 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:33 Download gff for BO34729.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8218440..8218847 22..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:48 Download gff for BO34729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8211540..8211947 22..429 99   Minus

BO34729.pep Sequence

Translation from 16 to 445

> BO34729.pep
MKFLAVCFFAVVAVAAAKPGIVAPLAYTAPAVVGSAAYVAPYASSYTANS
VAHSAAFPAAYTAAYTAPVAAAYTAPVAAAYTAPVAAAYAAPAAYTAAYT
APIARYAATPFAAPIAAPVAAAYTAPIAAAAPVLLKKASFLDH

BO34729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13674-PB 137 CG13674-PB 1..137 1..137 673 100 Plus
CG13674-PA 137 CG13674-PA 1..137 1..137 673 100 Plus
CG13679-PB 119 CG13679-PB 1..115 1..119 426 74.2 Plus
CG13678-PA 128 CG13678-PA 3..128 2..137 362 63.7 Plus
CG13047-PB 170 CG13047-PB 3..165 2..132 208 41.8 Plus