BO34730.complete Sequence
1513 bp assembled on 2013-10-29
GenBank Submission: KX795050
> BO34730.complete
GAAGTTATCAGTCGACATGAAGTGCGTTTTCCTGATACTGGCTGCACTTG
GATTAAGTTTTGCGGGGGAAGGTAGCACCTATGACCATTTTCGCTTGCCA
ACGGCTCTTCGACCACAAAGTTACGATGTTCGCATCCTGACACAATTGGA
AAATCCGGACGATTTTCACTTCAACGGAACTGTGAAAATTCAAATAGAAG
TTTTGCAAAACACACACAATATAACTTTGCACTCAAAGGATCTGACCATC
GATGATACGGAAATCACTCTCAGCCAAATTGGCGGAGAAGAGACAACGGA
GAACTGCATAACGTCTACGGCAGTGAATCCCACACACGACTTCTACATTC
TCAACACGTGTAAGGAGCTATTGGCTGGACAATTTTATGAGCTGAGTTTG
CCCTTTTCGGCCAAGTTACAAGATCAACTGGCGGGCTACTACCGAAGTTC
CTATGTCAATACAGTGGCCAATGAAACGAGATGGATCTCCGTTACTCAGT
TTGAGCCAGCTGCGGCTCGACTGGCATTTCCCTGCTTCGATGAACCTGGC
TACAAGGCATCCTTTGCCATCACCTTGGGTTATCACAAGAAGTACACCGG
TCTCAGCAACATGCCCGTGAATGAAACAAGGCCACATGAATCCATTCCGG
ATTATGTATGGACCTCGTTCGAGGAATCATTGCCGATGTCCACCTATCTG
GTTGCCTATTCCCTAAATGATTTCTCCCACAAACCATCTACTTTACCCAA
TGGAACTCTTTTTCGCACCTGGGCCAGGCCAAATGCGATCGATCAGTGTG
ATTATGCCGCGGAGCTTGGACCCAAAGTACTCAAATACTACGAGGAGTTA
TTCGGCATCAAGTTTCCGCTTCCCAAGGTGGATCAGATCGCTGTGCCGGA
TTTTAGTGCGGGTGCCATGGAGAACTGGGGTCTGGTTACCTTTGCGGAGA
GCACCCTTCTGTATTCCCCGGAGTACTCCTCGCAGGAGGCCAAGCAAGAG
ACTGCGAATATAGTGGCTCATGAGTTGGCCCACCAGTGGTTTGGCAACCT
GGTCACGATGAAGTGGTGGACGGACCTTTGGCTGAACGAGGGATTTGCCA
CTTATGTGGCCAGTTTGTGTGTGGAGGACATCCATCCACAGTGGCGTACC
CTTCAATTGGAATCAATGTCCAACCTTCTTACCATTTTCCGAAAGGACTC
TCTGGAGAGTAGTCATCCGATTTCGAGACCCATTGAAATGACTTCGCAGA
TTTCTGAGAGCTTTGACGAAATCTCTTACCAGAAGGGATCGTCGGTGATT
CGCATGATGCACTTGTTCCTGGGCGAGGAAGCGTTCCGAACAGGACTTAA
GTCATATCTGGAGAAATACACTTATAAGAACGCCGAGCAGGACAATCTTT
GGGAATCTCTTACCCAAGCTGCCCATAAGACTGGTTCTGGAAAGTGTTCC
CAAGACCATTCACGATCTGCCAGGACCCGATCAGTGGGTAATCTTGCAAG
CTTTCTAGACCAT
BO34730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11951-RB | 1482 | CG11951-PB | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| CG11951-RA | 2445 | CG11951-PA | 1..1334 | 17..1350 | 6670 | 100 | Plus |
| SP1029-RE | 2799 | CG11956-PE | 233..1434 | 228..1429 | 1705 | 76.1 | Plus |
| CG11951-RA | 2445 | CG11951-PA | 1335..1400 | 1430..1495 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11951-RB | 2707 | CG11951-RB | 142..1620 | 17..1495 | 7395 | 100 | Plus |
| CG11951-RA | 2628 | CG11951-RA | 142..1475 | 17..1350 | 6670 | 100 | Plus |
| SP1029-RE | 2981 | CG11956-RE | 286..1487 | 228..1429 | 1705 | 76.1 | Plus |
| CG11951-RA | 2628 | CG11951-RA | 1476..1541 | 1430..1495 | 330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29236525..29237383 | 1495..637 | 4295 | 100 | Minus |
| 3R | 32079331 | 3R | 29237665..29238128 | 480..17 | 2320 | 100 | Minus |
| 3R | 32079331 | 3R | 29246849..29247611 | 1429..667 | 1370 | 78.6 | Minus |
| 3R | 32079331 | 3R | 29242317..29243064 | 1414..667 | 935 | 75 | Minus |
| 3R | 32079331 | 3R | 29237447..29237604 | 636..479 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29239510..29239837 | 474..147 | 395 | 74.7 | Minus |
| 3R | 32079331 | 3R | 13300347..13300432 | 1014..1099 | 250 | 86 | Plus |
| 3R | 32079331 | 3R | 29247703..29247860 | 636..479 | 250 | 77.2 | Minus |
| 3R | 32079331 | 3R | 29243158..29243279 | 636..515 | 235 | 79.5 | Minus |
| 3R | 32079331 | 3R | 29248027..29248174 | 375..228 | 230 | 77 | Minus |
| 3R | 32079331 | 3R | 13310678..13310757 | 1013..1092 | 205 | 83.8 | Plus |
| 3R | 32079331 | 3R | 29143490..29143581 | 1013..1104 | 190 | 80.4 | Plus |
| 3R | 32079331 | 3R | 29246470..29246516 | 1495..1449 | 190 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:30:33 has no hits.
BO34730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:49 Download gff for
BO34730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11951-RB | 142..1620 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:34 Download gff for
BO34730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11951-RB | 142..1620 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:34 Download gff for
BO34730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29236523..29237383 | 637..1497 | 99 | <- | Minus |
| 3R | 29237447..29237602 | 481..636 | 100 | <- | Minus |
| 3R | 29237665..29238128 | 17..480 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:49 Download gff for
BO34730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25062245..25063105 | 637..1497 | 99 | <- | Minus |
| arm_3R | 25063169..25063324 | 481..636 | 100 | <- | Minus |
| arm_3R | 25063387..25063850 | 17..480 | 100 | | Minus |
BO34730.pep Sequence
Translation from 16 to 1513
> BO34730.pep
MKCVFLILAALGLSFAGEGSTYDHFRLPTALRPQSYDVRILTQLENPDDF
HFNGTVKIQIEVLQNTHNITLHSKDLTIDDTEITLSQIGGEETTENCITS
TAVNPTHDFYILNTCKELLAGQFYELSLPFSAKLQDQLAGYYRSSYVNTV
ANETRWISVTQFEPAAARLAFPCFDEPGYKASFAITLGYHKKYTGLSNMP
VNETRPHESIPDYVWTSFEESLPMSTYLVAYSLNDFSHKPSTLPNGTLFR
TWARPNAIDQCDYAAELGPKVLKYYEELFGIKFPLPKVDQIAVPDFSAGA
MENWGLVTFAESTLLYSPEYSSQEAKQETANIVAHELAHQWFGNLVTMKW
WTDLWLNEGFATYVASLCVEDIHPQWRTLQLESMSNLLTIFRKDSLESSH
PISRPIEMTSQISESFDEISYQKGSSVIRMMHLFLGEEAFRTGLKSYLEK
YTYKNAEQDNLWESLTQAAHKTGSGKCSQDHSRSARTRSVGNLASFLDH
BO34730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11951-PB | 493 | CG11951-PB | 1..493 | 1..493 | 2607 | 100 | Plus |
| CG11951-PA | 814 | CG11951-PA | 1..449 | 1..449 | 2359 | 99.6 | Plus |
| SP1029-PE | 932 | CG11956-PE | 1..487 | 1..480 | 1920 | 72.7 | Plus |
| SP1029-PD | 932 | CG11956-PD | 1..487 | 1..480 | 1920 | 72.7 | Plus |
| SP1029-PA | 932 | CG11956-PA | 1..487 | 1..480 | 1920 | 72.7 | Plus |
