BO34732.complete Sequence
670 bp assembled on 2013-10-29
GenBank Submission: KX796219
> BO34732.complete
GAAGTTATCAGTCGACATGCTGTCTCTTCTGATATGGCAGACTTTCACAT
ATTACTCGGTACTTGAAAATATATGCCAGGAAATCAAGGAGCAGCTTAAG
TTGAATATGAAACAGCTGCACATCACCCTCCTTTACGAGTCCTTGTGCCC
GGACAGCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGTTCG
GGGACTACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCGGAG
CGCAATGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAAGGG
CAATCGCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGGCGC
AGGTTAAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGCATT
GATCAGTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTGCCT
GTCCAGCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGACCA
AACAGTACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTCTTC
GATCAGCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGTTTG
TTATATGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCTGCC
AGGCAAGCTTTCTAGACCAT
BO34732.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9427-RB | 639 | CG9427-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
| CG9427-RA | 642 | CG9427-PA | 101..639 | 114..652 | 2695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9427-RB | 719 | CG9427-RB | 16..651 | 17..652 | 3180 | 100 | Plus |
| CG9427-RA | 847 | CG9427-RA | 241..779 | 114..652 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9625669..9625961 | 406..114 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 9625425..9625567 | 546..404 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 9625225..9625332 | 652..545 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 9626817..9626915 | 115..17 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:30:38 has no hits.
BO34732.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:51 Download gff for
BO34732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9427-RB | 16..651 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:36 Download gff for
BO34732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9427-RB | 16..651 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:36 Download gff for
BO34732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9625427..9625564 | 407..544 | 100 | <- | Minus |
| 3R | 9625223..9625332 | 545..654 | 98 | <- | Minus |
| 3R | 9625669..9625959 | 116..406 | 100 | <- | Minus |
| 3R | 9626817..9626915 | 17..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:51 Download gff for
BO34732.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5451149..5451286 | 407..544 | 100 | <- | Minus |
| arm_3R | 5450945..5451054 | 545..654 | 98 | <- | Minus |
| arm_3R | 5451391..5451681 | 116..406 | 100 | <- | Minus |
| arm_3R | 5452539..5452637 | 17..115 | 100 | | Minus |
BO34732.pep Sequence
Translation from 16 to 670
> BO34732.pep
MLSLLIWQTFTYYSVLENICQEIKEQLKLNMKQLHITLLYESLCPDSRNF
MHQLGPVYEEFGDYIDILLVPFGKSQSERNGAIFHCQHGPAECKGNRLQS
CVINSTANQAAQVKFVVCQMLAPDYSRIDQCANEAGLLTDVVHCLSSETG
TKLQLQAELVTKQYSPSFIPTIVYNGVFDQQLQDHSLRDFRGTVCYMLRQ
QNLLPSSSTICQASFLDH
BO34732.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9427-PB | 212 | CG9427-PB | 1..212 | 1..212 | 1119 | 100 | Plus |
| CG9427-PA | 213 | CG9427-PA | 23..213 | 22..212 | 956 | 95.3 | Plus |
| GILT1-PA | 250 | CG9796-PA | 27..208 | 36..195 | 208 | 33.5 | Plus |
| CG41378-PC | 196 | CG41378-PC | 16..181 | 36..195 | 191 | 31.4 | Plus |
| CG41378-PD | 205 | CG41378-PD | 25..190 | 36..195 | 191 | 31.4 | Plus |
