BO34734.complete Sequence
1735 bp assembled on 2014-03-03
GenBank Submission: KX795156
> BO34734.complete
GAAGTTATCAGTCGACATGGACTATCTGTTTGGCGACTATTTGGATAGCA
TCACGAATACACCGAACACAGATCGTCGGGATTCATTGCCCATTAGCTTT
AACAAAAGGAAACGCAAGCGTTTTTCGCAACGCATCCAGCTGGAGGGTAC
TCCGTTGGGTTCTGGTAAACGACGCTCCTCCGTTTCGGATGCCGGTCTAT
TGTCTGTCTCAAATAGTTTATTCGATTGTACCACCAGTCCGGATAAACTG
GAGTCGGACAAGCTGTTGCATGCCGAGCCGGAGGCGAGCGATGCCACTCC
AGCCAAGAAATCGATGCGCTTTAATCACTTTATGGACTTTTATACCACAG
AGTCCAACTACGTGGGCATATTGGACACCATACTGAATCTTTTTAAAAAC
AAGTTGGAAGAGTTGGCTGAAACCAATGATCCGCTGCTTAATAAGTCGGA
GATCAAGACGATCTTTGGCAACTTCCTGCCTATCCACGAGGTACACCAAA
GCATGCTGGAGCATCTGCGGAAATTGCATGCTAACTGGCGGGAGGATTGT
CTTATTGGAGACATTATCATTCAACATCGCGACGAGCTGATAAAGGCGTA
TCCACCATACGTCAACTTCTTCGAGCAGATGAAGGAGCAACTGCAGTACT
GCGATCGGGAATATCCGCGTTTCCACGCCTTTCTGAAGATTAATCAAACG
AAACCGGAGTGCGGACGCCAAGGTCTACAAGATCTGATGATCCGTCCAGT
TCAGCGATTGCCCAGTATCAGTCTGCTGCTAAATGATATATTGAAACATA
CGACAAGTGGCAATGCGGACCACGGACGTTTGGAGGAGGCTCTGAAGGCC
ATCAAGCAGGTGACACTGCACATCAACGAGGATAAAAGGCGGACCGAATC
GCGCATGGCCATCTTCGATATATTCAACGATATCGAAGGATGTCCGGCGC
ATTTAGTGAGTTCCAACCGCAGCTTTATTTTGAAGTGTGAGGTGAACGAG
CTCTCCGATTCGCTGAGCGGTCGTGGTGATAGCCTGGTCCTGTACCTGTT
CTCCGATTCCATTGAGCTATGCAAGCGGCGTTCTAAAGGATTCAACACTG
CAAAATCGCCAAGCACGGCCAAGACGCATAAGCATCTCAAGCTGATATCT
TTGAATACGATCCGGTTAGTGATTGACATCTCGGATAGTCCAAGAGCTTT
TGGTTTGCTCTTGCGGGGCGATAAGGAGAAGCTCTATACGTTTACGATCA
GTGATGAGGAGACAGATAAGTCGGTCTACGTAAAGAAATTGTGCAACCAG
ATTGCAGCCCACACCTGCCGTACTGATGCGGACAAACTTTTGATTTGTCG
CACCTCCCAGGAACTGGAGGTGGACATAAGTGATGTGAATGTCAGCACGC
TCAGCAAAGCCTTTAAACTGGCGGCCAAAACGCGACTCAAGGTGGGTCGT
GCTTTCTCCTTTAACAAAACGCCCAACAAACTGAAACGGGCCGTATCCAC
GATGATGACTTCGCCGTTTGGCAGCACCAACTCTCTAACACCTGCCTCTC
AATTGGCCCAGATGCGTTTGGCCAGCTGCACGAATATAAATGAGGTTGAT
GATGAGGACTGTGCAAGCATGCGAAGCAGTTCGCCGTCAACACAATCCGA
GATGCTAGTGGTACCGCCACTTTCGGTGCAACCCACGCGGAAAAACAAGG
CCGTTGTGGGCCGCATTGCAAGCTTTCTAGACCAT
BO34734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pbl-RF | 1704 | CG8114-PF | 1..1701 | 17..1717 | 8505 | 100 | Plus |
| pbl-RE | 2703 | CG8114-PE | 1000..2700 | 17..1717 | 8505 | 100 | Plus |
| pbl-RD | 3723 | CG8114-PD | 2020..3720 | 17..1717 | 8505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pbl-RF | 2598 | CG8114-RF | 280..1980 | 17..1717 | 8505 | 100 | Plus |
| pbl-RE | 3318 | CG8114-RE | 1000..2700 | 17..1717 | 8505 | 100 | Plus |
| pbl-RD | 4685 | CG8114-RD | 2367..4067 | 17..1717 | 8505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7897297..7898239 | 1331..389 | 4715 | 100 | Minus |
| 3L | 28110227 | 3L | 7898303..7898653 | 388..38 | 1755 | 100 | Minus |
| 3L | 28110227 | 3L | 7896911..7897063 | 1592..1440 | 765 | 100 | Minus |
| 3L | 28110227 | 3L | 7896727..7896852 | 1717..1592 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 7897115..7897233 | 1448..1330 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:58:54 has no hits.
BO34734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:50 Download gff for
BO34734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pbl-RD | 2367..4067 | 17..1719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:26 Download gff for
BO34734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pbl-RD | 2367..4067 | 17..1719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:26 Download gff for
BO34734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7896725..7896852 | 1592..1719 | 98 | <- | Minus |
| 3L | 7896912..7897061 | 1442..1591 | 100 | <- | Minus |
| 3L | 7897122..7897232 | 1331..1441 | 100 | <- | Minus |
| 3L | 7897298..7898239 | 389..1330 | 100 | <- | Minus |
| 3L | 7898303..7898653 | 38..388 | 100 | <- | Minus |
| 3L | 7898723..7898743 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:50 Download gff for
BO34734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7890012..7890161 | 1442..1591 | 100 | <- | Minus |
| arm_3L | 7890222..7890332 | 1331..1441 | 100 | <- | Minus |
| arm_3L | 7889825..7889952 | 1592..1719 | 98 | <- | Minus |
| arm_3L | 7890398..7891339 | 389..1330 | 100 | <- | Minus |
| arm_3L | 7891403..7891753 | 38..388 | 100 | <- | Minus |
| arm_3L | 7891823..7891843 | 17..37 | 100 | | Minus |
BO34734.pep Sequence
Translation from 16 to 1735
> BO34734.pep
MDYLFGDYLDSITNTPNTDRRDSLPISFNKRKRKRFSQRIQLEGTPLGSG
KRRSSVSDAGLLSVSNSLFDCTTSPDKLESDKLLHAEPEASDATPAKKSM
RFNHFMDFYTTESNYVGILDTILNLFKNKLEELAETNDPLLNKSEIKTIF
GNFLPIHEVHQSMLEHLRKLHANWREDCLIGDIIIQHRDELIKAYPPYVN
FFEQMKEQLQYCDREYPRFHAFLKINQTKPECGRQGLQDLMIRPVQRLPS
ISLLLNDILKHTTSGNADHGRLEEALKAIKQVTLHINEDKRRTESRMAIF
DIFNDIEGCPAHLVSSNRSFILKCEVNELSDSLSGRGDSLVLYLFSDSIE
LCKRRSKGFNTAKSPSTAKTHKHLKLISLNTIRLVIDISDSPRAFGLLLR
GDKEKLYTFTISDEETDKSVYVKKLCNQIAAHTCRTDADKLLICRTSQEL
EVDISDVNVSTLSKAFKLAAKTRLKVGRAFSFNKTPNKLKRAVSTMMTSP
FGSTNSLTPASQLAQMRLASCTNINEVDDEDCASMRSSSPSTQSEMLVVP
PLSVQPTRKNKAVVGRIASFLDH
BO34734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pbl-PF | 567 | CG8114-PF | 1..567 | 1..567 | 2908 | 100 | Plus |
| pbl-PE | 900 | CG8114-PE | 334..900 | 1..567 | 2908 | 100 | Plus |
| pbl-PD | 1240 | CG8114-PD | 674..1240 | 1..567 | 2908 | 100 | Plus |
| pbl-PC | 782 | CG8114-PC | 216..782 | 1..567 | 2908 | 100 | Plus |
| pbl-PB | 1311 | CG8114-PB | 745..1311 | 1..567 | 2908 | 100 | Plus |
