BO34737.complete Sequence
3271 bp assembled on 2014-07-07
GenBank Submission: KX795787
> BO34737.complete
GAAGTTATCAGTCGACATGAGCACACAAACTCGTTCAGGCGGCGGGGGAG
GCGGCGGCCATGCCCGCAACCAGAAAAAGTCAAATGCCAGCAACTCCGGC
GGAGGAGGAACCGGCCATCACGATGGAGTCTCACATGCTGCGGCCGCTGG
CAAGAAGGGAGGCCAGGATGCCAGCAAGACAGACAAGCCAGAGAAGGCCC
AGCCCAAGGCTACCACCGAACAGTTGCGCATTGCCCAGATCACCAATAGC
ACCACAGAGGATCCGCAGATCAACGAGAAGGTTCTCCTTCTTTTGACCAT
GACCCAACGTTCCGAGGAGGAGGTCTGCTGTGCCCTCAACGAGTGCGATT
ACGACCTGGAGGCCGCGGCCAACTTCTTGATCGAGGAGCTACCGCAGGGC
GCCTTTGCCAAGTACGAGAAAAAGCGCAAGAACAAGGCTGCAAATAACAC
GGCTGATGGTGCTGCTGGCGATGGCGATTGGGCCGATGGCAATGGCAATG
CGGACAGGCGGGAAAAGTCGCGAAACCGCAGCTCAAATCGCGGAGGCACC
CGTGGCTCCAGTGACAGTCGTGGATGGCGCGGAAGAGAGACTCGTGAGAA
TGAGCGCAACCAGCGCGAATCTCGCGAACCTTGGTCCGGGCAAAACGCTG
GTCAGGACCGCGGTGACGATCGGGCAAATGACAACTACCGCGGGCAGCGC
AACGGCGGCGGACGCAGTGGTCCCGGTGGCGGTGGACGCGGTGGTGGCTT
TGTCTCTCGCTCTGGCCGTGGCGGCGGCCGCATGGGGGGACGCACCGGTG
GACCGCGTGGCGATCGCGGCAGCGGAGGCCCTGGTGGTGCTTATGGATCA
GGTCGCGGTGGCAATGCAAACGAGGATCACCACGAGGTTGAGCTGTGGGA
CAACACCATTGCCCAAAATGCCGAGAAGCAGCAACAGGCTCATGACGATG
CCTGGGGCGACTGGAACAACGAGGAGTACGAGGGCTCGCTCAAGGACAGC
AAGGTGTTCACCACTAGCAACCTGGCAACGCAATCCGCTGCCAACGTGGT
TAGCGGAACTGGCGCGAGTGTTACAGCTGTTCCTGCGGCGGCTGGAACCG
AGATATCGGCGCCACCGGGCCTTGAACATCAGTTGGTGCAGCAGGGATCT
CATCTGGAGGAGAGCTCCAGCAGCGGCCCAGCGGCGGTCACACCGCCAGC
AACGCTGAGCGGCTCGGCGACCACGCCGCTGCTGCAATACAGCGCAGCGG
TCAGTAATCCACCGCCCCAGCTGCAGTCCCAGGGCACACAGTCAGGAGCG
GGTACAGGAGCGAGCGCAGCTGCCGGCGGAGGAGCAGGCAGCACACCGTC
ATCCTTTGTATCCGCCTCTCCCGACACATTCTCAAGCGCCGCCTCGGCAG
CTGCCACGCTGGTGCATCAAGCACAAAAGCAGCAGCAACTTCAGCAGCAG
ACGACGCCTATCAAGCCGTCGGCTACTTTGTCGGTCGAGCAATCTCAGTA
TTTCAACTCGTTGGCCAGCCAGGGCGTCAGCCCAGGTTCTGTTCCAGTGC
AATCGGCGCCAGCGGGTTACGCGCAAAACCCCGTGGCCGCCTACTCCCAA
ACTAGCACTAGCGTGGGTGTGAGCCAGTACCCCAATACCTATGCCAACGT
ATTCGCTTCTGGAACGGCAGCTGGAGCTGGCACTGCCGAGCAATCGCAGC
AGCAACCGCAGATACGGAGGGCACGTGTTAAGCTGCCACCACCCTCGAAG
ATTCCTGCGAGTGCCGTCGAAATGCCCGGAGACAATGCACTGAACAACAT
TGGCTACCTGGACGTGCAGTTCGGCGCTCTGGACTTCGGCACGGACGATG
GCTTCGAGCCATTGCCGGAGAAGGTTGGTTCGGGCTTTAGCATTGATGGT
CAGCAGCAGCAACAGCAGCCAGATGACTACCAGAGCAAGTCCCAGCAACA
GCAGCAGGTGACGCTAGCGGCAGGTCTACAGAGTTCGCAGATTAGCGATG
CCTTAAATGCAGCGGGCTATACAAGCCGTTCGACGTCACAGCAGCAGCAG
GGCGTTAGCTCAGCGGTGAATGCCACAATCGATCAGCTGACCAAGAGCGA
TCCCTACGGACAGACGGGCGGCAGTGGTAACGCCTACCAAAACGCGTACC
AGAGCAGTGGAGCGAGTAAGACAGCCAGTGGCTTTCCGACGACCGCGCCC
GGTGGCTACAGCAGCTCCACATACGCGAATGTGCAAAGCTCAGTAGCCAA
CAGTTACCAGCAGCAGGGATACGGCTCATACCAGCCCAGTTCCTACCAGC
AGCAGGCTGGCAGCGGGGCTCAAAGCGGTACAGGTGCGGTAAGCGGAGGC
GGAGGAACGGCGACGCAAAACATTCCGGTTGGAGGCAGCAGCAGCCAAAA
TAGCACGAGCGGCAATGCGAGCTCTGCCTACCTCACATCCGGATATTCGA
CACCACAAAGTGCTTACCAGTCAAGCCAGAGTGTTTATGGCAACACTGGA
CTGTCCAACAGCAGCGGGTTCTCTGGCAGTGCGAGCAACGCGTCCTCGCA
GTACGCCAATTTCAGTGCCAGCGCCAAGCTAAAGGATGCGACCACGGCCA
GTAGCGCCGCTCATTACGACAGTGTCTCAACCAGCAGCGGAGTGAGCAGC
AACAGCGGAAGCACAGGCAATGGCGGTGTGGTGAGCGGTCAAACAGGTGC
TAACCAGGCGGCTGTATCGAACAATAACAGCGTGAGCGGCAGCAGCTCGG
TCAGCAATGTGACGGCAGGCGTTGCGAGTGGCAACGTAGCTGGCGTGGGC
GGAGGCGTAAGCCAGAGCGGCGTAAGTAGTGGAGTCGGCGTGCCCGGTGG
CAGCGCGTCCAGCGTCGGTGTGAATGTGAACAACAACAGCAGCAGCGCCA
GCTCGGTGGGAGCAGCGACCGTTGCCCAGACAGCCACGGGAACCACCGCT
GCAGTGCTGGCCTCGCTGACCAACAAGAACACCAGCAGCAGCAATAGCAG
CGGCAGCGGTGGCAGTGCTGCCACGACGACGGGCAACGCCAGCGGACAAG
GTGCGGGAGCAAGCACCGGCGGCGTGGGCAGCTCGTCGGGTGCTGGTGGT
GCTGGTAGTGGTGGTGGCAGCGGTAGCGGCTTGGTGCCCACCAACATCCA
AATGGTTAGTCAATATATTCAGACTGGATTGCCATACTATCAGCAACCAG
TGTATTCCTACGAGGAATTGCAAATGATGCAACAGAGAGTGCCACATGTG
CCAGCAAGCTTTCTAGACCAT
BO34737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RJ | 3240 | CG8715-PJ | 1..3237 | 17..3253 | 16185 | 100 | Plus |
| lig-RH | 3993 | CG8715-PH | 1..3235 | 17..3251 | 16175 | 100 | Plus |
| lig-RG | 3999 | CG8715-PG | 1..3235 | 17..3251 | 16175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-RJ | 5116 | CG8715-RJ | 71..3307 | 17..3253 | 16185 | 100 | Plus |
| lig-RH | 5042 | CG8715-RH | 64..3298 | 17..3251 | 16175 | 100 | Plus |
| lig-RG | 5114 | CG8715-RG | 130..3364 | 17..3251 | 16175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8070821..8072238 | 576..1993 | 7090 | 100 | Plus |
| 2R | 25286936 | 2R | 8073974..8074500 | 2724..3250 | 2635 | 100 | Plus |
| 2R | 25286936 | 2R | 8072363..8072778 | 1994..2409 | 2080 | 100 | Plus |
| 2R | 25286936 | 2R | 8069899..8070280 | 17..398 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 8070333..8070513 | 396..576 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 8073125..8073236 | 2408..2519 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 8073366..8073471 | 2517..2622 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 8073597..8073704 | 2620..2727 | 525 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 15:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6893 | 2879..3043 | 219 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6910 | 2879..3045 | 170 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6857 | 2911..3043 | 165 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2517 | 2879..3066 | 164 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6857 | 2969..3082 | 154 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6853 | 1383..1450 | 153 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2966 | 2879..3045 | 152 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6818 | 2969..3073 | 148 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1144 | 2972..3045 | 144 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2414 | 2969..3045 | 143 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6819 | 1383..1449 | 139 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2443 | 2911..3083 | 137 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1543..1587 | 2969..3013 | 135 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6878 | 2969..3082 | 135 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6799 | 1383..1450 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6778 | 1395..1450 | 120 | 70.2 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..725 | 3023..2982 | 120 | 76.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1594 | 1384..1464 | 119 | 62.2 | Plus |
BO34737.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:16 Download gff for
BO34737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RJ | 71..3307 | 17..3255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:20 Download gff for
BO34737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lig-RJ | 71..3307 | 17..3255 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:20 Download gff for
BO34737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8073367..8073471 | 2518..2622 | 100 | -> | Plus |
| 2R | 8073600..8073700 | 2623..2723 | 100 | -> | Plus |
| 2R | 8069899..8070279 | 17..397 | 100 | -> | Plus |
| 2R | 8070335..8070512 | 398..575 | 100 | -> | Plus |
| 2R | 8070821..8072238 | 576..1993 | 100 | -> | Plus |
| 2R | 8072363..8072778 | 1994..2409 | 100 | -> | Plus |
| 2R | 8073127..8073234 | 2410..2517 | 100 | -> | Plus |
| 2R | 8073974..8074501 | 2724..3255 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:16 Download gff for
BO34737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3961479..3962006 | 2724..3255 | 99 | | Plus |
| arm_2R | 3957404..3957784 | 17..397 | 100 | -> | Plus |
| arm_2R | 3957840..3958017 | 398..575 | 100 | -> | Plus |
| arm_2R | 3958326..3959743 | 576..1993 | 100 | -> | Plus |
| arm_2R | 3959868..3960283 | 1994..2409 | 100 | -> | Plus |
| arm_2R | 3960632..3960739 | 2410..2517 | 100 | -> | Plus |
| arm_2R | 3960872..3960976 | 2518..2622 | 100 | -> | Plus |
| arm_2R | 3961105..3961205 | 2623..2723 | 100 | -> | Plus |
BO34737.pep Sequence
Translation from 16 to 3271
> BO34737.pep
MSTQTRSGGGGGGGHARNQKKSNASNSGGGGTGHHDGVSHAAAAGKKGGQ
DASKTDKPEKAQPKATTEQLRIAQITNSTTEDPQINEKVLLLLTMTQRSE
EEVCCALNECDYDLEAAANFLIEELPQGAFAKYEKKRKNKAANNTADGAA
GDGDWADGNGNADRREKSRNRSSNRGGTRGSSDSRGWRGRETRENERNQR
ESREPWSGQNAGQDRGDDRANDNYRGQRNGGGRSGPGGGGRGGGFVSRSG
RGGGRMGGRTGGPRGDRGSGGPGGAYGSGRGGNANEDHHEVELWDNTIAQ
NAEKQQQAHDDAWGDWNNEEYEGSLKDSKVFTTSNLATQSAANVVSGTGA
SVTAVPAAAGTEISAPPGLEHQLVQQGSHLEESSSSGPAAVTPPATLSGS
ATTPLLQYSAAVSNPPPQLQSQGTQSGAGTGASAAAGGGAGSTPSSFVSA
SPDTFSSAASAAATLVHQAQKQQQLQQQTTPIKPSATLSVEQSQYFNSLA
SQGVSPGSVPVQSAPAGYAQNPVAAYSQTSTSVGVSQYPNTYANVFASGT
AAGAGTAEQSQQQPQIRRARVKLPPPSKIPASAVEMPGDNALNNIGYLDV
QFGALDFGTDDGFEPLPEKVGSGFSIDGQQQQQQPDDYQSKSQQQQQVTL
AAGLQSSQISDALNAAGYTSRSTSQQQQGVSSAVNATIDQLTKSDPYGQT
GGSGNAYQNAYQSSGASKTASGFPTTAPGGYSSSTYANVQSSVANSYQQQ
GYGSYQPSSYQQQAGSGAQSGTGAVSGGGGTATQNIPVGGSSSQNSTSGN
ASSAYLTSGYSTPQSAYQSSQSVYGNTGLSNSSGFSGSASNASSQYANFS
ASAKLKDATTASSAAHYDSVSTSSGVSSNSGSTGNGGVVSGQTGANQAAV
SNNNSVSGSSSVSNVTAGVASGNVAGVGGGVSQSGVSSGVGVPGGSASSV
GVNVNNNSSSASSVGAATVAQTATGTTAAVLASLTNKNTSSSNSSGSGGS
AATTTGNASGQGAGASTGGVGSSSGAGGAGSGGGSGSGLVPTNIQMVSQY
IQTGLPYYQQPVYSYEELQMMQQRVPHVPASFLDH
BO34737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lig-PJ | 1079 | CG8715-PJ | 1..1079 | 1..1079 | 5510 | 100 | Plus |
| lig-PH | 1330 | CG8715-PH | 1..1078 | 1..1078 | 5503 | 100 | Plus |
| lig-PG | 1332 | CG8715-PG | 1..1078 | 1..1078 | 5503 | 100 | Plus |
| lig-PF | 1332 | CG8715-PF | 1..1078 | 1..1078 | 5503 | 100 | Plus |
| lig-PE | 1332 | CG8715-PE | 1..1078 | 1..1078 | 5503 | 100 | Plus |
