BO34742.complete Sequence
496 bp assembled on 2013-10-29
GenBank Submission: KX799392
> BO34742.complete
GAAGTTATCAGTCGACATGGAGGCCTTTACGCGCACACTGCAAAATACCT
TTCGCAGCACTAGGACCACCAGAACCACTACTACAACAACCACAAACTCC
TCCACCAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCA
ACAGAACTACGTCTCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCG
ATAACAAAGTGCTGAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAG
GAAATTGTTGTGAAAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCA
CGAGGAGAAGTCGGACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGT
TCCTGCTGCCCAAGGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGC
AAGGACGGAGTCCTGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGG
CGAGACACTGATTCCCATTGCGCACAAGGCAAGCTTTCTAGACCAT
BO34742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-RC | 465 | CG14207-PC | 1..462 | 17..478 | 2310 | 100 | Plus |
| CG14207-RD | 552 | CG14207-PD | 172..549 | 101..478 | 1890 | 100 | Plus |
| CG14207-RA | 552 | CG14207-PA | 172..549 | 101..478 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-RC | 753 | CG14207-RC | 25..487 | 16..478 | 2315 | 100 | Plus |
| CG14207-RD | 1380 | CG14207-RD | 477..854 | 101..478 | 1890 | 100 | Plus |
| CG14207-RA | 1240 | CG14207-RA | 477..854 | 101..478 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19610695..19610887 | 286..478 | 965 | 100 | Plus |
| X | 23542271 | X | 19610525..19610625 | 188..288 | 505 | 100 | Plus |
| X | 23542271 | X | 19610162..19610254 | 16..108 | 465 | 100 | Plus |
| X | 23542271 | X | 19610378..19610463 | 106..191 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:30:41 has no hits.
BO34742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:53 Download gff for
BO34742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RC | 26..487 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:38 Download gff for
BO34742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14207-RC | 26..487 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:38 Download gff for
BO34742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19610163..19610254 | 17..108 | 100 | -> | Plus |
| X | 19610381..19610462 | 109..190 | 100 | -> | Plus |
| X | 19610528..19610623 | 191..286 | 100 | -> | Plus |
| X | 19610696..19610887 | 287..480 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:53 Download gff for
BO34742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19504196..19504287 | 17..108 | 100 | -> | Plus |
| arm_X | 19504414..19504495 | 109..190 | 100 | -> | Plus |
| arm_X | 19504561..19504656 | 191..286 | 100 | -> | Plus |
| arm_X | 19504729..19504920 | 287..480 | 98 | | Plus |
BO34742.pep Sequence
Translation from 16 to 496
> BO34742.pep
MEAFTRTLQNTFRSTRTTRTTTTTTTNSSTSSTTNSALPSRIPKQQNYVS
DISSPLIQDEGDNKVLKLRFDVSQYAPEEIVVKTVDQKLLVHAKHEEKSD
TKSVYREYNREFLLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIP
IAHKASFLDH
BO34742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14207-PC | 154 | CG14207-PC | 1..154 | 1..154 | 771 | 100 | Plus |
| CG14207-PB | 192 | CG14207-PB | 54..192 | 10..154 | 650 | 91.7 | Plus |
| CG14207-PD | 183 | CG14207-PD | 58..183 | 29..154 | 631 | 100 | Plus |
| CG14207-PA | 183 | CG14207-PA | 58..183 | 29..154 | 631 | 100 | Plus |
| l(2)efl-PC | 187 | CG4533-PC | 75..161 | 62..147 | 194 | 43.7 | Plus |
