BO34747.complete Sequence
676 bp assembled on 2013-10-29
GenBank Submission: KX799948
> BO34747.complete
GAAGTTATCAGTCGACATGAAAGTGTGGGTGCGCCAAGATAAACACACAT
TCTTGCTTAACAAAGACGAACGGGGAAAAAAACCGGGAATGACGGCGAAC
ATAACGAAGAGTCCGCGCCCGCTGAAAATAACCATCGTGGGCGATGGCAT
GGTGGGCAAAACCTGCATGCTGATAACCTACACACGGAACGAGTTCCCCG
AGGAGTACATACCCACAGTGTTCGACAATCACGCCTGCAACATAGCCGTA
GATGATCGGGACTACAATCTGACCCTCTGGGACACTGCCGGCCAGGAGGA
TTACGAAAGGCTGCGCCCCCTGAGCTATCCCAGTACCAACTGCTTCCTGT
TGTGCTATTCGATCAGCAGTAGGACCTCATTCGAAAACGTGAAAAGCAAG
TGGTGGCCGGAGATCCGTCACTTCTCCGCCCACGTTCCCGTGGTTCTCGT
GGGCACCAAACTGGACTTGCGCATTCCCAACTCGGAGAAGTTCGTGACCA
CACAGGAGGGAAAAAAGATGCGCAAAGAGATACACGCATTCAACTTGGTC
GAGTGCTCCGCCAAGAAGAAGCAGAACCTGCAGCAGGTCTTCGAGGAGGC
GGTTAGAGCCGTGGAGAGGAAACCAAAGACGACGTCCAAGCAATCGTGCA
AAATACTGGCAAGCTTTCTAGACCAT
BO34747.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 645 | CG9366-PB | 1..642 | 17..658 | 3210 | 100 | Plus |
RhoL-RA | 573 | CG9366-PA | 1..570 | 89..658 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-RB | 1205 | CG9366-RB | 245..886 | 17..658 | 3210 | 100 | Plus |
RhoL-RA | 1041 | CG9366-RA | 207..816 | 49..658 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9497880..9498164 | 334..50 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 9497631..9497802 | 506..335 | 860 | 100 | Minus |
3R | 32079331 | 3R | 9497420..9497575 | 658..503 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:30:00 has no hits.
BO34747.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:37 Download gff for
BO34747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RB | 245..886 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:22 Download gff for
BO34747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoL-RB | 245..886 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:22 Download gff for
BO34747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9497880..9498164 | 50..334 | 100 | <- | Minus |
3R | 9498233..9498265 | 17..49 | 100 | | Minus |
3R | 9497417..9497572 | 506..660 | 98 | <- | Minus |
3R | 9497632..9497802 | 335..505 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:37 Download gff for
BO34747.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5323139..5323294 | 506..660 | 98 | <- | Minus |
arm_3R | 5323354..5323524 | 335..505 | 100 | <- | Minus |
arm_3R | 5323602..5323886 | 50..334 | 100 | <- | Minus |
arm_3R | 5323955..5323987 | 17..49 | 100 | | Minus |
BO34747.pep Sequence
Translation from 16 to 676
> BO34747.pep
MKVWVRQDKHTFLLNKDERGKKPGMTANITKSPRPLKITIVGDGMVGKTC
MLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR
PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLD
LRIPNSEKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVE
RKPKTTSKQSCKILASFLDH
BO34747.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoL-PB | 214 | CG9366-PB | 1..214 | 1..214 | 1140 | 100 | Plus |
RhoL-PA | 190 | CG9366-PA | 1..190 | 25..214 | 1007 | 100 | Plus |
Cdc42-PD | 191 | CG12530-PD | 4..191 | 36..214 | 516 | 51.6 | Plus |
Cdc42-PC | 191 | CG12530-PC | 4..191 | 36..214 | 516 | 51.6 | Plus |
Cdc42-PA | 191 | CG12530-PA | 4..191 | 36..214 | 516 | 51.6 | Plus |