Clone BO34747 Report

Search the DGRC for BO34747

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:347
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptRhoL-RB
Protein status:BO34747.pep: Imported from assembly
Sequenced Size:676

Clone Sequence Records

BO34747.complete Sequence

676 bp assembled on 2013-10-29

GenBank Submission: KX799948

> BO34747.complete
GAAGTTATCAGTCGACATGAAAGTGTGGGTGCGCCAAGATAAACACACAT
TCTTGCTTAACAAAGACGAACGGGGAAAAAAACCGGGAATGACGGCGAAC
ATAACGAAGAGTCCGCGCCCGCTGAAAATAACCATCGTGGGCGATGGCAT
GGTGGGCAAAACCTGCATGCTGATAACCTACACACGGAACGAGTTCCCCG
AGGAGTACATACCCACAGTGTTCGACAATCACGCCTGCAACATAGCCGTA
GATGATCGGGACTACAATCTGACCCTCTGGGACACTGCCGGCCAGGAGGA
TTACGAAAGGCTGCGCCCCCTGAGCTATCCCAGTACCAACTGCTTCCTGT
TGTGCTATTCGATCAGCAGTAGGACCTCATTCGAAAACGTGAAAAGCAAG
TGGTGGCCGGAGATCCGTCACTTCTCCGCCCACGTTCCCGTGGTTCTCGT
GGGCACCAAACTGGACTTGCGCATTCCCAACTCGGAGAAGTTCGTGACCA
CACAGGAGGGAAAAAAGATGCGCAAAGAGATACACGCATTCAACTTGGTC
GAGTGCTCCGCCAAGAAGAAGCAGAACCTGCAGCAGGTCTTCGAGGAGGC
GGTTAGAGCCGTGGAGAGGAAACCAAAGACGACGTCCAAGCAATCGTGCA
AAATACTGGCAAGCTTTCTAGACCAT

BO34747.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 645 CG9366-PB 1..642 17..658 3210 100 Plus
RhoL-RA 573 CG9366-PA 1..570 89..658 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-RB 1205 CG9366-RB 245..886 17..658 3210 100 Plus
RhoL-RA 1041 CG9366-RA 207..816 49..658 3050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497880..9498164 334..50 1425 100 Minus
3R 32079331 3R 9497631..9497802 506..335 860 100 Minus
3R 32079331 3R 9497420..9497575 658..503 780 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:30:00 has no hits.

BO34747.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:46:37 Download gff for BO34747.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 245..886 17..660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:22 Download gff for BO34747.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 245..886 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:22 Download gff for BO34747.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497880..9498164 50..334 100 <- Minus
3R 9498233..9498265 17..49 100   Minus
3R 9497417..9497572 506..660 98 <- Minus
3R 9497632..9497802 335..505 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:46:37 Download gff for BO34747.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5323139..5323294 506..660 98 <- Minus
arm_3R 5323354..5323524 335..505 100 <- Minus
arm_3R 5323602..5323886 50..334 100 <- Minus
arm_3R 5323955..5323987 17..49 100   Minus

BO34747.pep Sequence

Translation from 16 to 676

> BO34747.pep
MKVWVRQDKHTFLLNKDERGKKPGMTANITKSPRPLKITIVGDGMVGKTC
MLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR
PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLD
LRIPNSEKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVE
RKPKTTSKQSCKILASFLDH

BO34747.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PB 214 CG9366-PB 1..214 1..214 1140 100 Plus
RhoL-PA 190 CG9366-PA 1..190 25..214 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 36..214 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 36..214 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 36..214 516 51.6 Plus