BO34748.complete Sequence
3832 bp assembled on 2014-03-03
GenBank Submission: KX795824
> BO34748.complete
GAAGTTATCAGTCGACATGGCCTGGCGATTCAAGGCTTCCAAGTACAAAA
ATGCCGCACCCATTGTGCCCAAGGCGGAGGCATGCGTCCGCGAGATCTGC
GTGGGCAGCTACCAGACGTACGGTAACAACATCGCCGCCTCCGGCGCCTT
CATGGCCTTCAACTGGGAGCACACCGGGTCCAGCGTCGCTGTCCTCCCGC
TGGACGACTGCGGCCGGAAGAGCAAGACCATGCCGCTGCTCCATGGACAC
ACGGACACAGTGACGGACCTTAAGTTCTCCCCGTTCCACGACGGGCTGCT
GGCCACCGCCTCGCAGGATTGCCTGGTCAAGATCTGGCACATACCGGAAA
AAGGTCTGGAGCAGTCGCTTTCCGATCCGGAGGCAATCTTCTCACACAAG
CAGAGACGCGTAGAGACAGTGGGCTTCCATCCAACAGCAGATGGTTTGAT
GTACTCCACAGCCGCCGGCTGCGTGGCTCTCTTCGATCTCAGCACTCAAA
AGGAGATATTCTCGAACAATGAGCACCCCGAGGTGATACAGTCGGCCAGT
TGGCGCGAGGACGGTTCTGTTTTGGCCACCAGTTGCAAGGATAAGAATGT
GCGAATCTTCGATCCCCGTGCCGCTGGTTCACCCATCCAGCTGACTGCTG
AATCGCATCAGAGCATCAAGGATTCGCGGGTGGTGTGGTTAGGCAATCAG
CATCGCATCCTGACCACTGGCTTCGATGCGGCCCGCCTGCGACAGGTGAT
CATCCGTGATGTGCGCAACTTCAACACTCCAGAGAAAACTCTCGAACTGG
ACTGCTCGACGGGCATATTGATGCCCCTCTTCGATCCCGACACCAATATG
CTTTTCCTAGCCGGAAAGGGTGACACAACCATTAACTATTTGGAGATTAC
GGACAAGGATCCGTATTTGATTGAGGGCTTGCGTCATACTGGCGAGCAGA
CGAAGGGAGCTTGTCTCGTGCCCAAGCGGGCACTTAAAGTCATGGAAGCA
GAGGTTAACCGGGTGTTGCAATTGACCTCCAACATGGTCATACCCATCAT
GTACCAGGTGCCCAGAAAGACATACCGTGATTTCCACGCCGATCTATATC
CGGAGACCACTGGCTACAAGACAGAACTGGTGGCCGGCGAGTGGCTAAAT
GGCAGCAACCAGGCGGTGCCCAAGATGAGCCTTGATCCCGCCAAGCGTGA
GCATGGCGATGAGCCAATTATTATTCATCGCGGTAACCTGAGTGATTTTG
TTAAGAACCTGGAGAATCAGCGGGCCAAGAGCAACACCACTGGGAAACCC
AATCAGCAGGCCAAGCGCAACGATAACGAGCACTTTGTCATGCTAAACAC
GGGCAATAACTTTGAGGAGAAGAACGGCAATGACAACAGCAACGAGAGCA
ACGGAAAGAAGAGCACACCTTCACAGTCCCAGCCAGATGGCGAGTGCAGT
GAGCTCATCCGTAAGTTCGAGGCAAAATACAAGGTGGATTCGGAGAAGGA
AAAGGCCCATGCCTACGCCCAGTCTCACGAGGATGACAAGGAGTCACCCA
CTGAGCACGAGCATTCGACCGGCAGCAGCGAGGAGGTCTCCTCCTCCGGT
GGACTGGACAACCATTCGGCCAGTGGCAGCCACTCGCCACCGAAGCCCAT
GCCGCGCACATCGCGCAGCAATTCCCTTCCGGAGGCCAGTGATTCCGCTG
GGGAAAGCAGCAGCACCAACACGCCGCGCCCGAGGCCTCGCACCACCGCT
GCGTCTGCATACAAGCCACGTTTGGGTCCCAAGCCCTTCTCCAGCACCAC
AGGTGACGTTTCGTTTGACAAGGTGTTCGCCGTTCCCTTGGCACCGGGAT
CCCACGAGAATATCTCGAACGTGGGTCAGGACAGCGGAGTGGAGATGACA
CCAGCTCAGGGAGCCAAACCGGATCTCATTGTGGAAATCGAAATTAAAAA
GAAACACGAAAGGGAACCTGCTGTGTCCGGAAATGGAGTCCAGAAGTCAC
TGACCACTTCGGAGCGCCGTAAGTCCTCGGCTGACGATGATGAATCATCC
GACAAGATATTCGAGCAGAACTCTGAGTCATCGGAGAACTCGACGGAGGG
GGAAGATCGCACGGATGCGGATCTGCGAAGAAACTGCACCTCCAGGAGCA
GCTTTGCCGAGCGACGGCGCATATACGAGAATCGTTCCAAGAGTCAGGTG
GACGAGAAGCCTCAGTCGCCAGTGCCATTACGTCGCGAGCACTCCAAAGT
GGAGCCGCTGAAGCCCAACCAACAGCAGCAGCAGCAGGGCAATGTGATCG
ACACCAAGCGCATCTCTGTTCCAGAGGGCAAATTAATGGAGGAGCATCGC
CGCGGAAATGGCGCTGGACTCAAGAAGTCCGCCACTGAGGCGGCTTTTAG
CGCTGCCAGCACCAAGCGCACTTCCACCGTCTTCGGCAAGGTGTCCAAGT
TCAGGCACTTGAAGGGCACACCCGGTCACAAGTCCACGCACATCGAGAAC
TTGCGCAATCTAAGTCGCCAGATTCCGGGCGAATGCAATGGCTTCCACGC
TAACCAGGAGCGAGTTGCCGTGCCACTTTCGGGGCCCGGCGGCAAGATAG
CCATCTTTGAGTTGAGCCGCCCTGGACGGTTGCCCGATGGTGTGATTCCG
TCACTTGTGAACGGCAGCAACATCATGGACTTCCAGTGGGATCCGTTCGA
TGCCCAGCGATTGGCTGTGGCATGCGACGATGGCATTGTAAAGATCTGGC
ATATTGAAGCCGGTGGATTGAGTGAGCCGACAAACACACCTGCCGGCGAG
CTAACCGCTCATCTGGACAAGATTTACTTCATACGCTTCCACCCGCTGGC
TGCTGATGTTCTGTTAACCGCCAGCTACGATATGACCATCAAGCTGTGGG
ATTTGCGCACCATGACCGAGAAATGCTCGCTTTCGGGGCATACAGATCAA
ATCTTTGACTTCGCCTGGAGTCCCTGCGGCCGATTGGGCGCCACCGTGTG
CAAGGATGGCAAGATTAGGGTGTACAACCCAAGGAAATCGGAGACACCCA
TACGGGAGGGCAATGGACCGGTCGGTACTCGTGGAGCTCGGATCACCTGG
GCGTTGGAGGGACATTACATCGTCTGCACTGGTTTTGACAAGGTTTCGGA
GCGACAGATCAGCGTGTACAATGCACAAAAGTTGTCCGCCCCATTGAACA
CTGCCAGTTTGGATGTCTCACCCTCCATACTGATTCCATTCTATGACGAA
GATAGCTCCACACTGTTTGTTACGGGCAAGGGTGACTCCACAATCTACTG
TTACGAAATCACCGACGAGGAGCCGTACATCTGCCCACTGTCGCACCATC
GTTGCACCTCGCTGCACCAGGGCCTCAGTTTCCTCACCAAGAACCACTGC
GACGTGGCCAGCGTGGAGTTCTCAAAGGCCTATCGGCTAACCAATACCAC
AATTGAACCCCTGAGTTTCACAGTGCCCCGCATCAAGAGCGAGCTGTTCC
AAGACGATCTGTTCCCACCCACACGCATCACCTGGAGCGCCACACTGAGC
TCCGAGGATTGGTTCGCTAGCAATGATAAGGCGGCACCCAAAGTCAGCCT
CAAGCCCGAGGGCATGGAAACTTTATCTTCCATACAGCAAGTGCCAGCGC
AGCCCGTCAAGAAGCCAGATCATCCCCAGTTCGGTGGCCAGAAGTCCGAG
TACGAGATCAACAAACAGCAGGAGATCCAGAAATCGGTTAGCGCGCGCAT
GGAATTCACCACCAAGCTGGAGCAGGACGACATGGAGGGTGTGGATGAGA
ACGAGTGGCAGGAGGCAAGCTTTCTAGACCAT
BO34748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pod1-RG | 3801 | CG4532-PG | 1..3798 | 17..3814 | 18990 | 100 | Plus |
pod1-RF | 3768 | CG4532-PF | 1..2007 | 17..2023 | 10035 | 100 | Plus |
pod1-RF | 3768 | CG4532-PF | 2005..3765 | 2054..3814 | 8805 | 100 | Plus |
pod1-RD | 3225 | CG4532-PD | 1462..3222 | 2054..3814 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pod1-RG | 6374 | CG4532-RG | 315..4113 | 16..3814 | 18995 | 100 | Plus |
pod1-RF | 6031 | CG4532-RF | 315..2322 | 16..2023 | 10040 | 100 | Plus |
pod1-RF | 6031 | CG4532-RF | 2320..4080 | 2054..3814 | 8805 | 100 | Plus |
pod1-RD | 5837 | CG4532-RD | 1816..3576 | 2054..3814 | 8805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6809727..6810639 | 2230..3142 | 4565 | 100 | Plus |
X | 23542271 | X | 6806881..6807437 | 513..1069 | 2785 | 100 | Plus |
X | 23542271 | X | 6807799..6808341 | 1223..1765 | 2715 | 100 | Plus |
X | 23542271 | X | 6810702..6811047 | 3142..3487 | 1730 | 100 | Plus |
X | 23542271 | X | 6805909..6806220 | 16..327 | 1560 | 100 | Plus |
X | 23542271 | X | 6806617..6806804 | 325..512 | 940 | 100 | Plus |
X | 23542271 | X | 6808810..6808995 | 1764..1949 | 930 | 100 | Plus |
X | 23542271 | X | 6809483..6809657 | 2055..2229 | 875 | 100 | Plus |
X | 23542271 | X | 6807494..6807648 | 1068..1222 | 775 | 100 | Plus |
X | 23542271 | X | 6811115..6811252 | 3486..3623 | 690 | 100 | Plus |
X | 23542271 | X | 6811317..6811417 | 3624..3724 | 505 | 100 | Plus |
X | 23542271 | X | 6811478..6811569 | 3723..3814 | 460 | 100 | Plus |
X | 23542271 | X | 6809064..6809137 | 1950..2023 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:58:30 has no hits.
BO34748.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:23:39 Download gff for
BO34748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pod1-RG | 316..4113 | 17..3816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:13 Download gff for
BO34748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pod1-RG | 316..4113 | 17..3816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:13 Download gff for
BO34748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6811480..6811569 | 3725..3816 | 97 | | Plus |
X | 6805910..6806218 | 17..325 | 100 | -> | Plus |
X | 6806618..6806804 | 326..512 | 100 | -> | Plus |
X | 6810702..6811047 | 3142..3487 | 100 | -> | Plus |
X | 6806881..6807437 | 513..1069 | 100 | -> | Plus |
X | 6807496..6807648 | 1070..1222 | 100 | -> | Plus |
X | 6807799..6808341 | 1223..1765 | 100 | -> | Plus |
X | 6808812..6808995 | 1766..1949 | 100 | -> | Plus |
X | 6809064..6809137 | 1950..2023 | 100 | -> | Plus |
X | 6809374..6809406 | 2024..2056 | 100 | -> | Plus |
X | 6809485..6809657 | 2057..2229 | 100 | -> | Plus |
X | 6809727..6810638 | 2230..3141 | 100 | -> | Plus |
X | 6811117..6811252 | 3488..3623 | 100 | -> | Plus |
X | 6811317..6811417 | 3624..3724 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:23:39 Download gff for
BO34748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6705513..6705602 | 3725..3816 | 97 | | Plus |
arm_X | 6699943..6700251 | 17..325 | 100 | -> | Plus |
arm_X | 6700651..6700837 | 326..512 | 100 | -> | Plus |
arm_X | 6704735..6705080 | 3142..3487 | 100 | -> | Plus |
arm_X | 6700914..6701470 | 513..1069 | 100 | -> | Plus |
arm_X | 6701529..6701681 | 1070..1222 | 100 | -> | Plus |
arm_X | 6701832..6702374 | 1223..1765 | 100 | -> | Plus |
arm_X | 6702845..6703028 | 1766..1949 | 100 | -> | Plus |
arm_X | 6703097..6703170 | 1950..2023 | 100 | -> | Plus |
arm_X | 6703407..6703439 | 2024..2056 | 100 | -> | Plus |
arm_X | 6703518..6703690 | 2057..2229 | 100 | -> | Plus |
arm_X | 6703760..6704671 | 2230..3141 | 100 | -> | Plus |
arm_X | 6705150..6705285 | 3488..3623 | 100 | -> | Plus |
arm_X | 6705350..6705450 | 3624..3724 | 100 | -> | Plus |
BO34748.pep Sequence
Translation from 16 to 3832
> BO34748.pep
MAWRFKASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGAFMAFNW
EHTGSSVAVLPLDDCGRKSKTMPLLHGHTDTVTDLKFSPFHDGLLATASQ
DCLVKIWHIPEKGLEQSLSDPEAIFSHKQRRVETVGFHPTADGLMYSTAA
GCVALFDLSTQKEIFSNNEHPEVIQSASWREDGSVLATSCKDKNVRIFDP
RAAGSPIQLTAESHQSIKDSRVVWLGNQHRILTTGFDAARLRQVIIRDVR
NFNTPEKTLELDCSTGILMPLFDPDTNMLFLAGKGDTTINYLEITDKDPY
LIEGLRHTGEQTKGACLVPKRALKVMEAEVNRVLQLTSNMVIPIMYQVPR
KTYRDFHADLYPETTGYKTELVAGEWLNGSNQAVPKMSLDPAKREHGDEP
IIIHRGNLSDFVKNLENQRAKSNTTGKPNQQAKRNDNEHFVMLNTGNNFE
EKNGNDNSNESNGKKSTPSQSQPDGECSELIRKFEAKYKVDSEKEKAHAY
AQSHEDDKESPTEHEHSTGSSEEVSSSGGLDNHSASGSHSPPKPMPRTSR
SNSLPEASDSAGESSSTNTPRPRPRTTAASAYKPRLGPKPFSSTTGDVSF
DKVFAVPLAPGSHENISNVGQDSGVEMTPAQGAKPDLIVEIEIKKKHERE
PAVSGNGVQKSLTTSERRKSSADDDESSDKIFEQNSESSENSTEGEDRTD
ADLRRNCTSRSSFAERRRIYENRSKSQVDEKPQSPVPLRREHSKVEPLKP
NQQQQQQGNVIDTKRISVPEGKLMEEHRRGNGAGLKKSATEAAFSAASTK
RTSTVFGKVSKFRHLKGTPGHKSTHIENLRNLSRQIPGECNGFHANQERV
AVPLSGPGGKIAIFELSRPGRLPDGVIPSLVNGSNIMDFQWDPFDAQRLA
VACDDGIVKIWHIEAGGLSEPTNTPAGELTAHLDKIYFIRFHPLAADVLL
TASYDMTIKLWDLRTMTEKCSLSGHTDQIFDFAWSPCGRLGATVCKDGKI
RVYNPRKSETPIREGNGPVGTRGARITWALEGHYIVCTGFDKVSERQISV
YNAQKLSAPLNTASLDVSPSILIPFYDEDSSTLFVTGKGDSTIYCYEITD
EEPYICPLSHHRCTSLHQGLSFLTKNHCDVASVEFSKAYRLTNTTIEPLS
FTVPRIKSELFQDDLFPPTRITWSATLSSEDWFASNDKAAPKVSLKPEGM
ETLSSIQQVPAQPVKKPDHPQFGGQKSEYEINKQQEIQKSVSARMEFTTK
LEQDDMEGVDENEWQEASFLDH
BO34748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pod1-PG | 1266 | CG4532-PG | 1..1266 | 1..1266 | 6656 | 100 | Plus |
pod1-PF | 1255 | CG4532-PF | 1..1255 | 1..1266 | 6580 | 99.1 | Plus |
pod1-PD | 1074 | CG4532-PD | 403..1074 | 584..1266 | 3508 | 98.4 | Plus |
pod1-PC | 1074 | CG4532-PC | 403..1074 | 584..1266 | 3508 | 98.4 | Plus |
pod1-PB | 1074 | CG4532-PB | 403..1074 | 584..1266 | 3508 | 98.4 | Plus |
pod1-PD | 1074 | CG4532-PD | 1..577 | 1..607 | 2136 | 73.8 | Plus |
pod1-PC | 1074 | CG4532-PC | 1..577 | 1..607 | 2136 | 73.8 | Plus |
pod1-PD | 1074 | CG4532-PD | 54..395 | 858..1201 | 442 | 30.7 | Plus |
pod1-PD | 1074 | CG4532-PD | 666..1009 | 54..395 | 442 | 30.7 | Plus |
pod1-PC | 1074 | CG4532-PC | 54..395 | 858..1201 | 442 | 30.7 | Plus |
pod1-PC | 1074 | CG4532-PC | 666..1009 | 54..395 | 442 | 30.7 | Plus |