BO34749.complete Sequence
1780 bp assembled on 2014-07-07
GenBank Submission: KX794394
> BO34749.complete
GAAGTTATCAGTCGACATGGAGTCCAATATATATTTAGTTTTTCTATTGA
CGTTTCTGCTGTACAATAATGCCAGAGCCGAAATCAGCGATCATCTGCGG
GAGGACATACCGGACTTAGACATGGAGCTCTCCTCCGCCTCATCCGCCCA
TCTCAATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGC
ATCCCAGGAGACACATTAAGAGTAAGCGCCGCATGAAGAGAAGATACAAA
TGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTTTACCCACAC
CTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCGATGCCGATG
GTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGATCAACTGCCC
ATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAGTAAACGCAA
TACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATTACTGCAATG
AGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGATGTGACGGTG
ATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGCCGTTCTGGG
TCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCTTCTTCATTC
GTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAACAGGACCCG
GAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAGCGCCGGGGA
CAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCGGCTCGGGCA
GCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAGGTCACCCTG
ATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCGCGGTCACTG
GCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCGACGAGGAGT
CCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTACGACATGAA
AATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAACTCGTGCAC
CCAACTTTGGCTGATGACGCACTACTATCCACTGGGCTCGCTCTTTGATC
ACCTAAACCGTAACGCCCTAAGCCACAACGATATGGTATGGATTTGCCTG
TCCATAGCTAATGGGCTGGTACACTTGCACACAGAGATATTCGGCAAGCA
AGGCAAGCCAGCTATGGCCCACCGCGATTTGAAGTCAAAGAATATACTGG
TCACCTCGAACGGCTCCTGCGTGATAGCCGATTTTGGACTGGCCGTTACC
CATTCGCACGTCACAGGACAACTGGACCTGGGCAACAACCCCAAAGTGGG
CACCAAGCGCTACATGGCCCCAGAGGTTCTTGATGAAAGCATTGATTTAG
AATGCTTCGAAGCACTACGCCGGACAGATATTTACGCATTTGGACTTGTC
CTCTGGGAGGTTTGTCGCCGCACCATTTCTTGCGGCATAGCAGAGGAGTA
CAAGGTGCCCTTCTACGATGTGGTGCCAATGGATCCCAGCTTCGAGGATA
TGCGCAAGGTGGTCTGCATCGACAACTACAGGCCCTCCATTCCCAATCGC
TGGAGCTCGGATTCGTTAATGACTGGCATGTCCAAGCTCATGAAGGAGTG
CTGGCACCAAAACCCCGACGTGCGCTTGCCAGCGCTGCGCATCAAAAAGA
CTATACATAAGCTGGCTTCCGCTGACGAGAAGATACGCCTGGACTTCGAC
GAGGTCTGCGTTGCAAGCTTTCTAGACCAT
BO34749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RC | 1749 | CG1891-PC | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| sax-RB | 1608 | CG1891-PB | 85..1605 | 242..1762 | 7605 | 100 | Plus |
| sax-RA | 1713 | CG1891-PA | 190..1710 | 242..1762 | 7605 | 100 | Plus |
| sax-RB | 1608 | CG1891-PB | 1..86 | 122..207 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RC | 2451 | CG1891-RC | 55..1800 | 17..1762 | 8730 | 100 | Plus |
| sax-RB | 2716 | CG1891-RB | 545..2065 | 242..1762 | 7605 | 100 | Plus |
| sax-RA | 2415 | CG1891-RA | 244..1764 | 242..1762 | 7605 | 100 | Plus |
| sax-RB | 2716 | CG1891-RB | 417..546 | 78..207 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808366 | 317..978 | 3310 | 100 | Plus |
| 2R | 25286936 | 2R | 7808508..7808920 | 977..1389 | 2065 | 100 | Plus |
| 2R | 25286936 | 2R | 7808980..7809211 | 1388..1619 | 1145 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7809269..7809416 | 1615..1762 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 7807070..7807202 | 76..208 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 7807567..7807644 | 242..319 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 7806538..7806598 | 17..77 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 7807314..7807351 | 206..243 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fw2 | 3961 | Fw2 FW2 3961bp | 1028..1072 | 1561..1604 | 114 | 75.6 | Plus |
BO34749.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:22 Download gff for
BO34749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RC | 55..1800 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:29 Download gff for
BO34749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RC | 55..1800 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:29 Download gff for
BO34749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7807316..7807351 | 208..243 | 100 | -> | Plus |
| 2R | 7807569..7807644 | 244..319 | 100 | -> | Plus |
| 2R | 7806538..7806598 | 17..77 | 100 | -> | Plus |
| 2R | 7807072..7807201 | 78..207 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 320..978 | 100 | -> | Plus |
| 2R | 7808510..7808920 | 979..1389 | 100 | -> | Plus |
| 2R | 7808982..7809207 | 1390..1615 | 100 | -> | Plus |
| 2R | 7809270..7809416 | 1616..1764 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:22 Download gff for
BO34749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694577..3694706 | 78..207 | 100 | -> | Plus |
| arm_2R | 3694821..3694856 | 208..243 | 100 | -> | Plus |
| arm_2R | 3695074..3695149 | 244..319 | 100 | -> | Plus |
| arm_2R | 3694043..3694103 | 17..77 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 320..978 | 100 | -> | Plus |
| arm_2R | 3696015..3696425 | 979..1389 | 100 | -> | Plus |
| arm_2R | 3696487..3696712 | 1390..1615 | 100 | -> | Plus |
| arm_2R | 3696775..3696921 | 1616..1764 | 98 | | Plus |
BO34749.pep Sequence
Translation from 16 to 1780
> BO34749.pep
MESNIYLVFLLTFLLYNNARAEISDHLREDIPDLDMELSSASSAHLNGKE
LPAVPQNSVQTHPRRHIKSKRRMKRRYKCYSCEPPCRDPYEFTHTCQNAI
QCWKSRTRDADGQVQESRGCSTSPDQLPMICSQNSLKINGPSKRNTGKFV
NVVCCAGDYCNEGDFPELLPFDSNDVTVITADTSSISKMLVAVLGPFLVI
ALLGAVTIFFIRRSHRKRLAASRTKQDPEAYLVNDELLRATSAGDSTLRE
YLQHSVTSGSGSGLPLLVQRTLAKQVTLIECIGRGKYGEVWRGHWHGESI
AVKIFFSRDEESWKRETEIYSTILLRHENILGFIGSDMTSRNSCTQLWLM
THYYPLGSLFDHLNRNALSHNDMVWICLSIANGLVHLHTEIFGKQGKPAM
AHRDLKSKNILVTSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTKRYM
APEVLDESIDLECFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKVPFY
DVVPMDPSFEDMRKVVCIDNYRPSIPNRWSSDSLMTGMSKLMKECWHQNP
DVRLPALRIKKTIHKLASADEKIRLDFDEVCVASFLDH
BO34749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-PC | 582 | CG1891-PC | 1..582 | 1..582 | 3091 | 100 | Plus |
| sax-PA | 570 | CG1891-PA | 1..570 | 1..582 | 3007 | 97.9 | Plus |
| sax-PB | 535 | CG1891-PB | 1..535 | 36..582 | 2829 | 97.8 | Plus |
| babo-PC | 595 | CG8224-PC | 119..594 | 69..574 | 1064 | 45.2 | Plus |
| babo-PA | 601 | CG8224-PA | 119..600 | 69..574 | 1050 | 44.1 | Plus |
