Clone BO34754 Report

Search the DGRC for BO34754

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:347
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG5707-RB
Protein status:BO34754.pep: Imported from assembly
Sequenced Size:1117

Clone Sequence Records

BO34754.complete Sequence

1117 bp assembled on 2013-10-29

GenBank Submission: KX799512

> BO34754.complete
GAAGTTATCAGTCGACATGTGCAGCATCAGTCAATTGCAGTGGATACACA
ATCGCTTATCGATTGGAGCCCAAAACAAAGAGCCCATGGACGTGCGCATC
GACATGCCGTGGGGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGT
ACGACCCATCCTGGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGG
ACAAATTGCTGCCCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGAC
CTGCCCGGCCACGGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCA
CTTCGTGGACTACCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCT
GGCAGAAGGTGTCCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTC
GTATTCGCTTCGCTGTACCCACATCGCACCGACATGTTGGTCAGCATAGA
TATAGTGAAGACCCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGC
GCAAGAACATCGAGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCC
AAGCGCCAGGAGCCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCT
GTACAAAGGCACCGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCC
TGGAGCGCAACATCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTC
TCGCGCGACGGTCGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCC
CTTCGCCGCTGAACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGA
TCAAGGGCTCCGAGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATT
GGCATCCTCAGGGAGAACAACCCGCACTTCGAGCTCCACGAAGTGCAGGG
CACCCACCACGTTCACCTCAACAATGCGCAGGGTGTGGCGGCCGTCATTA
ATCCCTTCATTCTGCACCACCGCCCACCGCATCTGGAGAACTGGACGGTG
GACGGGACGGATGAGACGCTGCCCGAGGTCGTCAAGGAATTCAAGTTGGC
CGTGGAGGATTCAGAGAATGTCAAGCGGAGGAAGAGAAAAAGCAACCTAG
CAAGCTTTCTAGACCAT

BO34754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-RC 1086 CG5707-PC 1..1083 17..1099 5415 100 Plus
CG5707-RB 1086 CG5707-PB 1..1083 17..1099 5415 100 Plus
CG5707-RA 1074 CG5707-PA 52..1071 80..1099 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-RC 1714 CG5707-RC 400..1483 16..1099 5420 100 Plus
CG5707-RB 1477 CG5707-RB 163..1246 16..1099 5420 100 Plus
CG5707-RA 1533 CG5707-RA 283..1302 80..1099 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2189391..2190410 1099..80 5100 100 Minus
3L 28110227 3L 2191141..2191205 80..16 325 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:31:12 has no hits.

BO34754.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:03 Download gff for BO34754.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RB 164..1246 17..1101 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:53 Download gff for BO34754.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RB 164..1246 17..1101 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:53 Download gff for BO34754.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189387..2190410 80..1101 99 <- Minus
3L 2191142..2191204 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:03 Download gff for BO34754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2189387..2190410 80..1101 99 <- Minus
arm_3L 2191142..2191204 17..79 100   Minus

BO34754.pep Sequence

Translation from 16 to 1117

> BO34754.pep
MCSISQLQWIHNRLSIGAQNKEPMDVRIDMPWGYVVGKWYGNRQVRPILA
LHGWLDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYL
CVILRVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTR
YRKPPSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTD
YSVELENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAEL
ARTIKNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVH
LNNAQGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSE
NVKRRKRKSNLASFLDH

BO34754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PC 361 CG5707-PC 1..361 1..361 1950 100 Plus
CG5707-PB 361 CG5707-PB 1..361 1..361 1950 100 Plus
CG5707-PA 357 CG5707-PA 12..357 16..361 1841 98.6 Plus
CG15879-PA 342 CG15879-PA 8..319 25..335 877 49.7 Plus
CG5704-PB 335 CG5704-PB 12..316 26..333 799 49.2 Plus