BO34755.complete Sequence
451 bp assembled on 2013-10-29
GenBank Submission: KX794922
> BO34755.complete
GAAGTTATCAGTCGACATGGCAAAACTTCAAGAGGATCCACCTACGGGTG
TCTCGGGTGCTCCAACAGATAATAATATTATGATATGGAATGCTGTGATT
TTTGGTCCACACGACACACCCTTCGAAGACGGAACATTTAAGTTAACCAT
AGAATTTACGGAAGAGTACCCAAACAAACCGCCAACGGTTCGATTTGTAT
CGAAAGTATTTCATCCCAATGTATACGCAGATGGTGGAATATGCTTGGAC
ATATTGCAGAACCGCTGGAGTCCCACGTACGATGTGTCAGCCATATTAAC
ATCCATACAGTCACTGCTGAGCGATCCCAATCCCAACTCACCGGCTAACT
CCACCGCCGCCCAGCTGTATAAAGAAAATCGGCGCGAGTACGAGAAGCGT
GTGAAAGCCTGCGTTGAGCAGAGTTTCATCGATGCAAGCTTTCTAGACCA
T
BO34755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc6-RC | 456 | CG2013-PC | 45..453 | 25..433 | 2045 | 100 | Plus |
| Ubc6-RA | 456 | CG2013-PA | 45..453 | 25..433 | 2045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc6-RC | 1142 | CG2013-RC | 231..639 | 25..433 | 2045 | 100 | Plus |
| Ubc6-RA | 2166 | CG2013-RA | 231..639 | 25..433 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4950467..4950752 | 310..25 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 4950282..4950407 | 433..308 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:31:16 has no hits.
BO34755.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:04 Download gff for
BO34755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD6-RE | 41..457 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:15:56 Download gff for
BO34755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc6-RA | 227..639 | 22..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:15:56 Download gff for
BO34755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4950467..4950757 | 17..310 | 98 | | Minus |
| 3R | 4950278..4950404 | 311..435 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:04 Download gff for
BO34755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 776000..776126 | 311..435 | 98 | <- | Minus |
| arm_3R | 776189..776479 | 17..310 | 98 | | Minus |
BO34755.pep Sequence
Translation from 16 to 451
> BO34755.pep
MAKLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEE
YPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSL
LSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSFIDASFLDH
BO34755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc6-PC | 151 | CG2013-PC | 15..151 | 3..139 | 732 | 99.3 | Plus |
| Ubc6-PA | 151 | CG2013-PA | 15..151 | 3..139 | 732 | 99.3 | Plus |
| eff-PC | 147 | CG7425-PC | 13..136 | 4..127 | 325 | 45.2 | Plus |
| eff-PB | 147 | CG7425-PB | 13..136 | 4..127 | 325 | 45.2 | Plus |
| eff-PA | 147 | CG7425-PA | 13..136 | 4..127 | 325 | 45.2 | Plus |
