BO34769.complete Sequence
622 bp assembled on 2013-11-25
> BO34769.complete
GAAGTTATCAGTCGACATGTGGAAAATTAACCTTGTGCCCACAATGGGCA
CCGAAAAGAAAAAACACCCGCCAAAAAAGAAGTCACAGGAGAAAAAAAAG
AGCGGTCATAGCAAGTCGAAGCAGAATTCTTTGAATTCCAATCTGCCCAA
GATATGTTTCGTCATAGCAATTTTCGATCTGCTGCATGCGTTATATTTTA
CAGTTCAAGCAATGATTCTTCTGGTTAAACAGTTCAGCGCGTTTGCTATG
TTGGCGCTTTTGGGTGTCATTTTTTGGGTTATAATGGTCATCCTGTTGAT
GGTTGGCCTTTATAAGCGCAAGCCAGTTTTCGTAAGGTATTGGCTTATAT
TTTCCATAGTCGGCTTTATAACCGATATTCTATTTCTACTTTGGGGCATT
GCGACCTCAATAACTGTGGACTGGGACCGTCTTAATGAGTTTTCAATAAT
TTTCCTTGGAATATTTGTTGAAAGCGCCTGCATATATTTCATACATCGGT
ACTATCAGATTATGGATGAATCGAAAAAGAAGAGGACCCTATGTTGTGGC
GGAAAAAACGAAAAGAAAAAGTCTAAAAGCCCAAAAAAGAAGAAAGGCAA
AAAAGCAAGCTTTCTAGACCAT
BO34769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42535-RA | 564 | CG42535-PA | 1..561 | 44..604 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42535-RA | 674 | CG42535-RA | 16..605 | 17..604 | 2885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10630703..10630920 | 232..17 | 1025 | 99.1 | Minus |
3L | 28110227 | 3L | 10630353..10630502 | 464..315 | 750 | 100 | Minus |
3L | 28110227 | 3L | 10630558..10630643 | 316..231 | 430 | 100 | Minus |
3L | 28110227 | 3L | 10630213..10630295 | 547..465 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:35:53 has no hits.
BO34769.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-25 13:38:29 Download gff for
BO34769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42535-RA | 16..599 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:17:56 Download gff for
BO34769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42535-RA | 16..599 | 17..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:17:56 Download gff for
BO34769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10630215..10630295 | 465..545 | 100 | <- | Minus |
3L | 10630109..10630161 | 546..598 | 100 | <- | Minus |
3L | 10630353..10630500 | 317..464 | 100 | <- | Minus |
3L | 10630558..10630641 | 233..316 | 100 | <- | Minus |
3L | 10630703..10630920 | 17..232 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-25 13:38:29 Download gff for
BO34769.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10623209..10623261 | 546..598 | 100 | <- | Minus |
arm_3L | 10623315..10623395 | 465..545 | 100 | <- | Minus |
arm_3L | 10623453..10623600 | 317..464 | 100 | <- | Minus |
arm_3L | 10623658..10623741 | 233..316 | 100 | <- | Minus |
arm_3L | 10623803..10624020 | 17..232 | 99 | | Minus |
BO34769.pep Sequence
Translation from 16 to 622
> BO34769.pep
MWKINLVPTMGTEKKKHPPKKKSQEKKKSGHSKSKQNSLNSNLPKICFVI
AIFDLLHALYFTVQAMILLVKQFSAFAMLALLGVIFWVIMVILLMVGLYK
RKPVFVRYWLIFSIVGFITDILFLLWGIATSITVDWDRLNEFSIIFLGIF
VESACIYFIHRYYQIMDESKKKRTLCCGGKNEKKKSKSPKKKKGKKASFL
DH
BO34769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42535-PA | 187 | CG42535-PA | 1..187 | 10..196 | 970 | 100 | Plus |
CG42536-PA | 184 | CG42536-PA | 14..136 | 42..164 | 247 | 35.8 | Plus |
CG14151-PA | 196 | CG14151-PA | 14..176 | 48..197 | 227 | 30.1 | Plus |
CG34238-PA | 206 | CG34238-PA | 13..128 | 48..163 | 186 | 27.6 | Plus |