BO34772.complete Sequence
703 bp assembled on 2013-10-29
GenBank Submission: KX796708
> BO34772.complete
GAAGTTATCAGTCGACATGATTGAGCGGCGCAGTCAGCTGGATAAGATAA
TCATCACCGCCATGGACCGCTTCGTCTGGTTCGTCCTACTCGTGGTCATG
TCCCACCTGGTCACCGAGTTCACCCGCGTCTCTGGATATGCGCGTGGCCA
GCGCCACGAGCTGGTGCTGCTGAATGATACGCTGCTGCAGCCCATGCCCG
TGCAGAACATGGTGCTGTACCCCAGCCAGGAGTACGGCCAGTACCAGCAG
CGACCCTCCTCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCTCCTC
CATGGGAGCCATGAGCAGCCTGCAGCAGAACGCGGCATTTTTGCTCAGCA
GCTTGGCGGCGGGAGTGAGTCCGACAAATGGAGCAGCTGCACCCGGCAGC
AACGCGGCCATTTTGTCCCTCGGCGATAGCCAACCGGCTCACACGGCCGA
GAGCACGTATCCCATGTTCAGCTTGCGTCCGCTGATCGACAGCATTTTCG
AGATTCCAATTTCGACGCTGCGTGCTGTTAACAACCTGGTGGGTCGCCTG
ACCGGCGGGTATCGCCAGGCGCCGGCGGAAGTGTCGCAAAAATCCGTGGC
AGCTGGAACGGCGCTGCCGCCCGGCAGGCAAAACCCCACGCTGAGTGCCC
ATCCCAGTGGGCAACGGATGCGCGAGGAGATGGCGGCAAGCTTTCTAGAC
CAT
BO34772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9815-RC | 672 | CG9815-PC | 1..669 | 17..685 | 3345 | 100 | Plus |
| CG9815-RB | 699 | CG9815-PB | 56..696 | 45..685 | 3205 | 100 | Plus |
| CG9815-RA | 660 | CG9815-PA | 19..657 | 47..685 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9815-RC | 1108 | CG9815-RC | 249..917 | 17..685 | 3345 | 100 | Plus |
| CG9815-RD | 928 | CG9815-RD | 94..737 | 42..685 | 3220 | 100 | Plus |
| CG9815-RB | 979 | CG9815-RB | 148..788 | 45..685 | 3205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23421948..23422271 | 502..179 | 1620 | 100 | Minus |
| 2R | 25286936 | 2R | 23421712..23421896 | 685..501 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 23422435..23422568 | 178..45 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:31:26 has no hits.
BO34772.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:09 Download gff for
BO34772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9815-RC | 249..917 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:01 Download gff for
BO34772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9815-RC | 249..917 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:01 Download gff for
BO34772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23422435..23422566 | 47..178 | 100 | <- | Minus |
| 2R | 23431763..23431792 | 17..46 | 100 | | Minus |
| 2R | 23421710..23421894 | 503..687 | 98 | <- | Minus |
| 2R | 23421948..23422271 | 179..502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:09 Download gff for
BO34772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19309233..19309417 | 503..687 | 98 | <- | Minus |
| arm_2R | 19309471..19309794 | 179..502 | 100 | <- | Minus |
| arm_2R | 19309958..19310089 | 47..178 | 100 | <- | Minus |
| arm_2R | 19319286..19319315 | 17..46 | 100 | | Minus |
BO34772.pep Sequence
Translation from 16 to 703
> BO34772.pep
MIERRSQLDKIIITAMDRFVWFVLLVVMSHLVTEFTRVSGYARGQRHELV
LLNDTLLQPMPVQNMVLYPSQEYGQYQQRPSSSASASASASASSSMGAMS
SLQQNAAFLLSSLAAGVSPTNGAAAPGSNAAILSLGDSQPAHTAESTYPM
FSLRPLIDSIFEIPISTLRAVNNLVGRLTGGYRQAPAEVSQKSVAAGTAL
PPGRQNPTLSAHPSGQRMREEMAASFLDH
BO34772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9815-PC | 223 | CG9815-PC | 1..223 | 1..223 | 1105 | 100 | Plus |
| CG9815-PB | 232 | CG9815-PB | 18..232 | 9..223 | 1059 | 99.1 | Plus |
| CG9815-PA | 219 | CG9815-PA | 7..219 | 11..223 | 1057 | 100 | Plus |
| CG9815-PD | 208 | CG9815-PD | 1..208 | 16..223 | 1036 | 100 | Plus |
