BO34780.complete Sequence
415 bp assembled on 2013-10-29
GenBank Submission: KX795526
> BO34780.complete
GAAGTTATCAGTCGACATGTGCATGGTCACATCCGTATCCCCCGAAGTCT
GCACCAGCTTCTATGCCACATGGTGCTTAGTTTGGGGGTCCTTGTTTGGG
TTCGGTTACTCGTTCTTGCTCCTTGCCGATCTGATGGAAGTCGTAACAGT
TGACAGAAATTTTCCGTTCCAAAGGACACTCAGGGTGGTCATTGCTGGTT
TGGGACTTTCCTATCTTGGGGCGGGAATTTTAATGACTCTTGGCATAAAA
TACAATAAGCCAATTGTGTTTAAATGTGGAAAGTTCTTGTGCTTAATATT
TGCAATTGGTTCAATTCCGACTATAATCTTTCCTGTTGTGCATTTCTGCA
CAATTCCCTGCTTGTGTCGGTATATGAAAAATCGATGGAACAAGGGCGCA
AGCTTTCTAGACCAT
BO34780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-RA | 384 | CG43393-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-RA | 1138 | CG43393-RA | 29..409 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22090427..22090663 | 253..17 | 1185 | 100 | Minus |
2R | 25286936 | 2R | 22090291..22090376 | 335..250 | 415 | 98.8 | Minus |
2R | 25286936 | 2R | 22090152..22090214 | 397..335 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:32:22 has no hits.
BO34780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:34 Download gff for
BO34780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43393-RA | 29..409 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:29 Download gff for
BO34780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43393-RA | 29..409 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:29 Download gff for
BO34780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22090150..22090213 | 336..399 | 96 | <- | Minus |
2R | 22090291..22090372 | 254..335 | 100 | <- | Minus |
2R | 22090427..22090663 | 17..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:34 Download gff for
BO34780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17977655..17977718 | 336..399 | 96 | <- | Minus |
arm_2R | 17977796..17977877 | 254..335 | 100 | <- | Minus |
arm_2R | 17977932..17978168 | 17..253 | 100 | | Minus |
BO34780.pep Sequence
Translation from 16 to 415
> BO34780.pep
MCMVTSVSPEVCTSFYATWCLVWGSLFGFGYSFLLLADLMEVVTVDRNFP
FQRTLRVVIAGLGLSYLGAGILMTLGIKYNKPIVFKCGKFLCLIFAIGSI
PTIIFPVVHFCTIPCLCRYMKNRWNKGASFLDH
BO34780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43393-PA | 127 | CG43393-PA | 1..127 | 1..127 | 689 | 100 | Plus |