Clone BO34780 Report

Search the DGRC for BO34780

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:347
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG43393-RA
Protein status:BO34780.pep: Imported from assembly
Sequenced Size:415

Clone Sequence Records

BO34780.complete Sequence

415 bp assembled on 2013-10-29

GenBank Submission: KX795526

> BO34780.complete
GAAGTTATCAGTCGACATGTGCATGGTCACATCCGTATCCCCCGAAGTCT
GCACCAGCTTCTATGCCACATGGTGCTTAGTTTGGGGGTCCTTGTTTGGG
TTCGGTTACTCGTTCTTGCTCCTTGCCGATCTGATGGAAGTCGTAACAGT
TGACAGAAATTTTCCGTTCCAAAGGACACTCAGGGTGGTCATTGCTGGTT
TGGGACTTTCCTATCTTGGGGCGGGAATTTTAATGACTCTTGGCATAAAA
TACAATAAGCCAATTGTGTTTAAATGTGGAAAGTTCTTGTGCTTAATATT
TGCAATTGGTTCAATTCCGACTATAATCTTTCCTGTTGTGCATTTCTGCA
CAATTCCCTGCTTGTGTCGGTATATGAAAAATCGATGGAACAAGGGCGCA
AGCTTTCTAGACCAT

BO34780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-RA 384 CG43393-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-RA 1138 CG43393-RA 29..409 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22090427..22090663 253..17 1185 100 Minus
2R 25286936 2R 22090291..22090376 335..250 415 98.8 Minus
2R 25286936 2R 22090152..22090214 397..335 315 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:32:22 has no hits.

BO34780.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:34 Download gff for BO34780.complete
Subject Subject Range Query Range Percent Splice Strand
CG43393-RA 29..409 17..399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:29 Download gff for BO34780.complete
Subject Subject Range Query Range Percent Splice Strand
CG43393-RA 29..409 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:29 Download gff for BO34780.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22090150..22090213 336..399 96 <- Minus
2R 22090291..22090372 254..335 100 <- Minus
2R 22090427..22090663 17..253 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:34 Download gff for BO34780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17977655..17977718 336..399 96 <- Minus
arm_2R 17977796..17977877 254..335 100 <- Minus
arm_2R 17977932..17978168 17..253 100   Minus

BO34780.pep Sequence

Translation from 16 to 415

> BO34780.pep
MCMVTSVSPEVCTSFYATWCLVWGSLFGFGYSFLLLADLMEVVTVDRNFP
FQRTLRVVIAGLGLSYLGAGILMTLGIKYNKPIVFKCGKFLCLIFAIGSI
PTIIFPVVHFCTIPCLCRYMKNRWNKGASFLDH

BO34780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43393-PA 127 CG43393-PA 1..127 1..127 689 100 Plus