BO34788.complete Sequence
1726 bp assembled on 2014-07-17
GenBank Submission: KX797425
> BO34788.complete
GAAGTTATCAGTCGACATGCGGGGCTTATCAGCGTTTCTGCTTTTGCTCT
GCCTCCAACGGGTGAAGTCGGACGAATCTGCTGCAGCACGGCGCCCCAAC
ATAATCATCATTATGGCCGACGACATGGGCTTCGATGATGTGAGCTTTCG
AGGCGGACGGGAGTTTCTAACTCCCAATATCGACGCCCTGGCCTATCACG
GTCGTCTACTGGATCGGCTCTACGCTCCGGCAATGTGTACTCCATCTCGG
GGAGCATTGCTCAGCGGCCGGTATCCAATACACACGGGCACACAGCACTT
TGTAATCAGCAACGAAGAGCCTTGGGCCCTGACCCTCAATGCCACATTGA
TGCCGGAGATCTTCAAGGAGGCAGGCTACTCCACCAACCTGGTGGGAAAA
TGGCATCTGGGCTTCTCGCGCCCGGAATACACGCCCACTCGGCGGGGATT
CGATTACCACTTCGGCTATTGGGGCGCTTATATAGACTACTTCCAGAGAC
GATCCAAGATGCCGGTGGCCAACTATAGTCTGGGCTACGATTTCCGGCGG
AACATGGAGTTGGAGTGCCGGGATCGTGGGGTTTATGTAACTGATTTGTT
AACCGCCGAGGCGGAACGATTGATCAAAGACCATGCTGATAAGGAGCAAC
CCCTATTCCTGATGCTCAGCCACTTGGCTGCCCACACGGCCAACGAGGAT
GATCCTCTGCAAGCTCCCGAGGAAGAGATTCAAAAGTTTTCCTACATTAA
GGATCCAAACCGAAGGAAATATGCAGCGATGATCTCCAAACTGGACCAGA
GCGTGGGACGTATAATAACCGCTCTGTCTTCTACAGATCAACTGGAGAAT
AGCATAGTGATCTTCTACTCGGACAATGGAGCTCCATCGGTTGGTATGTT
CTCTAATACGGGTTCAAATTTCCCACTCCGCGGACAGAAGAATACTCCGT
GGGAGGGCGGCGTACGGGTGGCTGGTGCGATTTGGAGCTCCGGGCTTCAG
GCACGCGGCTCCATCTTCCGCCAGCCCTTATACGTCGCCGACTGGTTGCC
CACGCTTTCACGTGCTGCGGACATAGAGCTGGATAGCTCTCTAAAACTGG
ACGGGATCGATTTGTGGCCCGAGCTATCCGGATCCGCAGATGCTCCCCAC
GTTCCTCGAGAGATTTTGCACATCTTGGACGACGTTTGGCGACTTTCTGC
TCTTCAAATGGGACAGTGGAAGTATGTGAATGGCACCACTGCCTCCGGTC
GATACGATTCGGTGCTCACCTACCGAGAACTGGACGACCTAGATCCCCGC
GACAGTCGCTATGCAGTTACGGTGCGCAACTCCGCCACCTCAAGGGCCCT
TTCTCGCTACGATTTACGACGACTGACGCAACAACGGATTTCTCTCACCC
GTCGATTGGCCGCAGTCCGTTGTGGAGACCTCCAGAGGTCATGTAATCCT
CTGTTGGAGGAGTGCTTGTACGACATCTTATCGGATCCCTGTGAGCAGAA
CAATCTGGTTTACTCCGAGAGGCACTCCGACGTTTTGACCGCCCTGCGAA
GACGTGTTCAAGAACTAAGAGCAAGTGCATCACGCCCGGGCAATCGTGCC
AGCATGCCGGAGGCAGATCCCACATTGCACACCTGCGCCTGGGAGTCCTT
TGAAGTGCTGAAGCCGAGAATCGTTCCCTTGGAATGCGACTACGTAGGCG
TACCTTGTGCAAGCTTTCTAGACCAT
BO34788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32191-RC | 1695 | CG32191-PC | 1..1692 | 17..1708 | 8460 | 100 | Plus |
| CG32191-RB | 1695 | CG32191-PB | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32191-RC | 2419 | CG32191-RC | 400..2091 | 17..1708 | 8460 | 100 | Plus |
| CG32191-RB | 2077 | CG32191-RB | 58..1749 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17806876..17807774 | 1673..775 | 4495 | 100 | Minus |
| 3L | 28110227 | 3L | 17807842..17808331 | 776..287 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 17808419..17808580 | 288..127 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 17808636..17808747 | 128..17 | 560 | 100 | Minus |
| 3L | 28110227 | 3L | 17806779..17806818 | 1708..1669 | 185 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:12:24 has no hits.
BO34788.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:07 Download gff for
BO34788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32191-RB | 58..1749 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:38 Download gff for
BO34788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32191-RB | 58..1749 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:38 Download gff for
BO34788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17806777..17806813 | 1674..1710 | 94 | <- | Minus |
| 3L | 17806876..17807772 | 777..1673 | 100 | <- | Minus |
| 3L | 17807842..17808330 | 288..776 | 100 | <- | Minus |
| 3L | 17808420..17808579 | 128..287 | 100 | <- | Minus |
| 3L | 17808637..17808747 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:07 Download gff for
BO34788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17799877..17799913 | 1674..1710 | 94 | <- | Minus |
| arm_3L | 17799976..17800872 | 777..1673 | 100 | <- | Minus |
| arm_3L | 17800942..17801430 | 288..776 | 100 | <- | Minus |
| arm_3L | 17801520..17801679 | 128..287 | 100 | <- | Minus |
| arm_3L | 17801737..17801847 | 17..127 | 100 | | Minus |
BO34788.pep Sequence
Translation from 16 to 1726
> BO34788.pep
MRGLSAFLLLLCLQRVKSDESAAARRPNIIIIMADDMGFDDVSFRGGREF
LTPNIDALAYHGRLLDRLYAPAMCTPSRGALLSGRYPIHTGTQHFVISNE
EPWALTLNATLMPEIFKEAGYSTNLVGKWHLGFSRPEYTPTRRGFDYHFG
YWGAYIDYFQRRSKMPVANYSLGYDFRRNMELECRDRGVYVTDLLTAEAE
RLIKDHADKEQPLFLMLSHLAAHTANEDDPLQAPEEEIQKFSYIKDPNRR
KYAAMISKLDQSVGRIITALSSTDQLENSIVIFYSDNGAPSVGMFSNTGS
NFPLRGQKNTPWEGGVRVAGAIWSSGLQARGSIFRQPLYVADWLPTLSRA
ADIELDSSLKLDGIDLWPELSGSADAPHVPREILHILDDVWRLSALQMGQ
WKYVNGTTASGRYDSVLTYRELDDLDPRDSRYAVTVRNSATSRALSRYDL
RRLTQQRISLTRRLAAVRCGDLQRSCNPLLEECLYDILSDPCEQNNLVYS
ERHSDVLTALRRRVQELRASASRPGNRASMPEADPTLHTCAWESFEVLKP
RIVPLECDYVGVPCASFLDH
BO34788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32191-PC | 564 | CG32191-PC | 1..564 | 1..564 | 2967 | 100 | Plus |
| CG32191-PB | 564 | CG32191-PB | 1..564 | 1..564 | 2967 | 100 | Plus |
| CG7402-PA | 579 | CG7402-PA | 22..545 | 21..543 | 1314 | 49.2 | Plus |
| CG7408-PD | 585 | CG7408-PD | 15..551 | 4..542 | 1285 | 47.3 | Plus |
| CG7408-PC | 585 | CG7408-PC | 15..551 | 4..542 | 1285 | 47.3 | Plus |
