BO34793.complete Sequence
1144 bp assembled on 2013-10-29
GenBank Submission: KX794114
> BO34793.complete
GAAGTTATCAGTCGACATGAGAAATCAACGGACTATAACCGATTTGCCAT
TCGAAGTGCTCGATATCATATTTAGTAACTTACGAAATCTAAGGGACAAA
CTTCGACTGGCGCAGGTTGATGATTATCTGGGAAAAGCGTTTTCGTACCA
CAGCCGCAGTGATTACAAGAAGTTCTCACCAAAAATACATTTTCCCGTTC
GACTTTATCGAGTTCTGCTGGCGAATTGTGGCCCTTCCATTGTGGAATTT
ACCTGTGGATCGGACACCTGGAGCGATCTGTTGGCCAAATCGATTGCGAA
GTACTGTCCCAACCTGGAGTCGGTGAACATCAGTGCTACATTAAGAAATA
GTCACAGTCTTCAATTTTTTCTATTGAATTTGGCGAATTCTTTAATATCG
GTCGAACTGAAGCTCAACGATAGTTGCCAATCGCCGAGGATACTTAATGC
CGTCGCCGAGCTGAAACACTTGAAAAAATTCTTGTATGAAGGATACATTG
ACCGGGGAGTTAATCAGCTGTGCAAACTGGTTGATCTGGAGGAGCTGCAA
CTCATCTATCAAGGTAGAGGATATAGATGCAGAGCAGTTAATCTTCTTCA
AATTTGCGGAAATATGACAAATCTTCGGCGTTTGACTGTGAGCAATATAT
CGATATCTCAACCAGAAAGCTTCCATCCCATGATATGGCCAAACTTAAAA
GATTTGAAAATGCAAAATTGCGAAATCTCCACAGTGATGCCCGATTGTCC
CAAGCTGAAAACCTTATATATCAAATTCTGCAAATGTAGAATCAAAGGAT
ATGTATGCAGTTTTATTTTGAAAAACGGCAATAATATCGAGGAAATCGAT
GAAAGCTGTGAACCGGCACCATTTGATGGCCAGAGTTTCCTTCAAGTCAT
TCGAAGCTGTCCAAAATTGCAAGTGTTGTCCACTCAAATGGGGGGTATCA
AGATCTACCAAGCTTTTGTTACATCCGTAGTGGATATTCTCAAGGAGACT
GCATCAACGCGAAAAGAACCCTTCGAGCTGATATTGTACTGCCGAGACAA
GCTTAGATGGTTTCGACGATTTTTACAACGGACTTCTAATCCTGAAGTGA
TTCATACGCTTTACCTGTACAAGTTTGCAAGCTTTCTAGACCAT
BO34793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-RB | 1113 | CG44005-PB | 1..1110 | 17..1126 | 5550 | 100 | Plus |
| CG44005-RA | 1113 | CG44005-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-RB | 1406 | CG44005-RB | 55..1164 | 17..1126 | 5550 | 100 | Plus |
| CG44005-RA | 1247 | CG44005-RA | 55..1164 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18070660..18071224 | 1072..508 | 2825 | 100 | Minus |
| 3L | 28110227 | 3L | 18071573..18072069 | 513..17 | 2470 | 99.8 | Minus |
| 3L | 28110227 | 3L | 18070542..18070595 | 1126..1073 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:09:33 has no hits.
BO34793.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:25 Download gff for
BO34793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44005-RA | 55..1164 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:19 Download gff for
BO34793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44005-RA | 55..1164 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:19 Download gff for
BO34793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18070540..18070595 | 1073..1128 | 96 | <- | Minus |
| 3L | 18070660..18071222 | 510..1072 | 100 | <- | Minus |
| 3L | 18071577..18072069 | 17..509 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:25 Download gff for
BO34793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18064677..18065169 | 17..509 | 100 | | Minus |
| arm_3L | 18063640..18063695 | 1073..1128 | 96 | <- | Minus |
| arm_3L | 18063760..18064322 | 510..1072 | 100 | <- | Minus |
BO34793.pep Sequence
Translation from 16 to 1144
> BO34793.pep
MRNQRTITDLPFEVLDIIFSNLRNLRDKLRLAQVDDYLGKAFSYHSRSDY
KKFSPKIHFPVRLYRVLLANCGPSIVEFTCGSDTWSDLLAKSIAKYCPNL
ESVNISATLRNSHSLQFFLLNLANSLISVELKLNDSCQSPRILNAVAELK
HLKKFLYEGYIDRGVNQLCKLVDLEELQLIYQGRGYRCRAVNLLQICGNM
TNLRRLTVSNISISQPESFHPMIWPNLKDLKMQNCEISTVMPDCPKLKTL
YIKFCKCRIKGYVCSFILKNGNNIEEIDESCEPAPFDGQSFLQVIRSCPK
LQVLSTQMGGIKIYQAFVTSVVDILKETASTRKEPFELILYCRDKLRWFR
RFLQRTSNPEVIHTLYLYKFASFLDH
BO34793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44005-PB | 370 | CG44005-PB | 1..370 | 1..370 | 1940 | 100 | Plus |
| CG44005-PA | 370 | CG44005-PA | 1..370 | 1..370 | 1940 | 100 | Plus |
| CG44006-PA | 374 | CG44006-PA | 1..373 | 1..371 | 864 | 47.3 | Plus |
| CG44004-PC | 368 | CG44004-PC | 1..365 | 1..367 | 655 | 39.2 | Plus |
| CG44004-PB | 368 | CG44004-PB | 1..365 | 1..367 | 655 | 39.2 | Plus |
