BO34794.complete Sequence
1441 bp assembled on 2013-10-29
GenBank Submission: KX797920
> BO34794.complete
GAAGTTATCAGTCGACATGGATCACCGTTACAGAAGATCGTTAAGGAGCT
CAGCAGATGTGTGGAGTCGCAGCATCCTGGGACGCATCCAGGCAACCCTC
GGTCGCCAGAAGGCCGTCAAGATGATGGAGCTGTCGGCCAGTGCTGGTGA
TCACCAGAGCTGGGAGGAGATGAAGCAGCAGAGCTCGGCCTTCGCGGTCC
TGGGACGCAGGCCAAGAATGGAGGATAGGTTTATTATCGAGGAGAACATC
AACAACAACACTGGTATCTCCTTCTTTGCCGTATTTGACGGTCATGGCGG
CGAGTTTGCCGCAGACTTCGCCAAGGATGTGCTGGTGAAGAACATCTACA
ATAAGATCATCGAGATGTCCAAGCTTCTGAAGACGGAAGGAAATTCCGGA
GATTACGATAAGAGTCCCTATTTAGCGCGCAAGCAGAGTCGCAAGGATGC
AAACAAGGAGAACACAGAACCGACGGCAGGGGTGATGCGAAAGGATAGTC
TAAGGAAGGCCCACAGCACCACGGCGGATTGTAGTGCTATTAAGCAAAAG
ACAACCGAGGCATCCATTGCCGACATCTACACAGTCCAATTAAACTCGGC
GATGAGAGCCAGTGGGAATTTGGGAGCCGCCAAGGATTCCTTCCTCAACA
ACAACAACAACGGACAGAACGGAGCAGCCAATGCGCCACCTCCAAACTAC
GAAGCCAAGTGCTACATCGAACACGGACGTATTAACTTTGGTAAACTGAT
CACGGACGAGATCATGTCGGCCGACTACAAGCTTGTGGAGCAGGCCAAGA
GAGCGACCAACATTGCGGGAACCACCGCTCTAATAGCGATAGTTCAGGGC
TCAAAGCTGATTGTGGCCAATGTGGGCGACTCCCGCGGAGTCATGTACGA
CTGGCGTGGAATCGCCATACCGCTTTCATTCGATCACAAGCCGCAGCAAG
TGCGAGAACGAAAGAGAATCCACGATGCAGGCGGATTCATCGCCTTCCGA
GGCGTTTGGCGTGTGGCCGGGGTGTTGGCCACGTCACGTGCTCTAGGGGA
CTATCCGCTTAAAGATAAGAATCTGGTGATTGCTACGCCGGACATTTTGA
CCTTCGAACTAAACGATCACAAACCCCATTTTCTGATACTGGCATCCGAT
GGGCTGTGGGACACGTTCAGCAATGAGGAGGCCTGCACTTTTGCGTTGGA
GCATCTGAAAGAGCCGGACTTTGGCGCCAAATCACTTGCCATGGAGTCGT
ATAAACGTGGCTCCGTGGACAACATCACCGTGCTGGTGATCGTCTTCAAG
AACGATGTCTACAAGATTGGCAGCTCAGCGGGAAAAGCGGGAGAAGAATC
CCTAAAAGTCCCAGCCAAATCTCAACCAGTTGCGCCTGCAGTTGTGCAAC
GCTCGAATTCAATCAAAACCAAAGCAAGCTTTCTAGACCAT
BO34794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7115-RC | 1410 | CG7115-PC | 1..1407 | 17..1423 | 7035 | 100 | Plus |
| CG7115-RD | 1416 | CG7115-PD | 1..1413 | 17..1423 | 6940 | 99.6 | Plus |
| CG7115-RE | 1575 | CG7115-PE | 204..1572 | 55..1423 | 6845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7115-RC | 1995 | CG7115-RC | 119..1525 | 17..1423 | 7035 | 100 | Plus |
| CG7115-RD | 2001 | CG7115-RD | 119..1531 | 17..1423 | 6940 | 99.6 | Plus |
| CG7115-RE | 2612 | CG7115-RE | 774..2142 | 55..1423 | 6845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7823449..7824028 | 226..805 | 2900 | 100 | Plus |
| 2L | 23513712 | 2L | 7824580..7824880 | 1123..1423 | 1505 | 100 | Plus |
| 2L | 23513712 | 2L | 7824087..7824351 | 805..1069 | 1325 | 100 | Plus |
| 2L | 23513712 | 2L | 7822927..7823103 | 55..231 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 7824426..7824480 | 1068..1122 | 275 | 100 | Plus |
| 2L | 23513712 | 2L | 7821269..7821308 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:32:30 has no hits.
BO34794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:38 Download gff for
BO34794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7115-RC | 119..1525 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:33 Download gff for
BO34794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7115-RC | 119..1525 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:33 Download gff for
BO34794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7821269..7821308 | 17..56 | 100 | -> | Plus |
| 2L | 7822929..7823100 | 57..228 | 100 | -> | Plus |
| 2L | 7823452..7824028 | 229..805 | 100 | -> | Plus |
| 2L | 7824088..7824351 | 806..1069 | 100 | -> | Plus |
| 2L | 7824428..7824480 | 1070..1122 | 100 | -> | Plus |
| 2L | 7824580..7824880 | 1123..1425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:38 Download gff for
BO34794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7821269..7821308 | 17..56 | 100 | -> | Plus |
| arm_2L | 7822929..7823100 | 57..228 | 100 | -> | Plus |
| arm_2L | 7823452..7824028 | 229..805 | 100 | -> | Plus |
| arm_2L | 7824088..7824351 | 806..1069 | 100 | -> | Plus |
| arm_2L | 7824428..7824480 | 1070..1122 | 100 | -> | Plus |
| arm_2L | 7824580..7824880 | 1123..1425 | 99 | | Plus |
BO34794.pep Sequence
Translation from 16 to 1441
> BO34794.pep
MDHRYRRSLRSSADVWSRSILGRIQATLGRQKAVKMMELSASAGDHQSWE
EMKQQSSAFAVLGRRPRMEDRFIIEENINNNTGISFFAVFDGHGGEFAAD
FAKDVLVKNIYNKIIEMSKLLKTEGNSGDYDKSPYLARKQSRKDANKENT
EPTAGVMRKDSLRKAHSTTADCSAIKQKTTEASIADIYTVQLNSAMRASG
NLGAAKDSFLNNNNNGQNGAANAPPPNYEAKCYIEHGRINFGKLITDEIM
SADYKLVEQAKRATNIAGTTALIAIVQGSKLIVANVGDSRGVMYDWRGIA
IPLSFDHKPQQVRERKRIHDAGGFIAFRGVWRVAGVLATSRALGDYPLKD
KNLVIATPDILTFELNDHKPHFLILASDGLWDTFSNEEACTFALEHLKEP
DFGAKSLAMESYKRGSVDNITVLVIVFKNDVYKIGSSAGKAGEESLKVPA
KSQPVAPAVVQRSNSIKTKASFLDH
BO34794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7115-PC | 469 | CG7115-PC | 1..469 | 1..469 | 2400 | 100 | Plus |
| CG7115-PD | 471 | CG7115-PD | 1..471 | 1..469 | 2387 | 99.6 | Plus |
| CG7115-PE | 524 | CG7115-PE | 67..524 | 12..469 | 2335 | 99.6 | Plus |
| CG7115-PB | 524 | CG7115-PB | 67..524 | 12..469 | 2335 | 99.6 | Plus |
| CG7115-PA | 524 | CG7115-PA | 67..524 | 12..469 | 2335 | 99.6 | Plus |
