BO34796.complete Sequence
430 bp assembled on 2013-10-29
GenBank Submission: KX794919
> BO34796.complete
GAAGTTATCAGTCGACATGGGGCGGTTGCTGTTTGTTCTTCTGATTTGTT
CCCCAATACTGTCAATTAAATTCCAAGCAAATGCAGAGGATAACTCAACA
AAGAATGGCTTAGATCGAAACAGAGAAGGAGGTAAATCTTATGGAGGTCA
TAAGGCGAATGTACCAGATGTTTCAAGGTTTCAAAGATCATGTTCAACTC
AAGAATGTAAGGAAAAGGAATTCAATGATATCCTCGACTCCATTCTGAGC
TCGGAAACAACTACGGAGCCTGAACGGGAAGAGGCTCCACCGAGGAATGT
TCCACAGAGACCAAATCGACCCTACATGGTTCGACCCAGCAGTAACGGGC
ACTTTCTTCATGACATTGTAACTTGGGTTGAAAGAACAAAGAGGGCAATA
TTTGGATTTGGAGCAAGCTTTCTAGACCAT
BO34796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43254-RB | 399 | CG43254-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
| CG43254-RA | 387 | CG43254-PA | 1..384 | 17..412 | 1765 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43254-RB | 491 | CG43254-RB | 25..420 | 17..412 | 1980 | 100 | Plus |
| CG43254-RA | 479 | CG43254-RA | 25..408 | 17..412 | 1765 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7739036..7739246 | 412..202 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 7739412..7739539 | 144..17 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 7739296..7739356 | 203..143 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:32:37 has no hits.
BO34796.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:47:42 Download gff for
BO34796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43254-RB | 25..420 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:16:37 Download gff for
BO34796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43254-RB | 25..420 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:16:37 Download gff for
BO34796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7739296..7739355 | 144..203 | 100 | <- | Minus |
| 3R | 7739413..7739539 | 17..143 | 100 | | Minus |
| 3R | 7739034..7739244 | 204..414 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:47:42 Download gff for
BO34796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3564756..3564966 | 204..414 | 99 | <- | Minus |
| arm_3R | 3565018..3565077 | 144..203 | 100 | <- | Minus |
| arm_3R | 3565135..3565261 | 17..143 | 100 | | Minus |
BO34796.pep Sequence
Translation from 16 to 430
> BO34796.pep
MGRLLFVLLICSPILSIKFQANAEDNSTKNGLDRNREGGKSYGGHKANVP
DVSRFQRSCSTQECKEKEFNDILDSILSSETTTEPEREEAPPRNVPQRPN
RPYMVRPSSNGHFLHDIVTWVERTKRAIFGFGASFLDH
BO34796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43254-PB | 132 | CG43254-PB | 1..132 | 1..132 | 700 | 100 | Plus |
| CG43254-PA | 128 | CG43254-PA | 1..128 | 1..132 | 663 | 97 | Plus |
