BO34827.complete Sequence
1339 bp assembled on 2013-10-29
GenBank Submission: KX795997
> BO34827.complete
GAAGTTATCAGTCGACATGAAAACACCAAAAGCGAAAGAATCAGAAAAGG
CTGAATTAAAGCCGATTAAAAAAGAGCCAGGCGTCGTGGAGGATGGTAAA
GTGACAAAGAAATCAAAGACGAAGCCCAAAAAGAAGACGGTTAAAGTGCC
AAAAGATGAAGTAAAGGCCGCTGTCCAGGAAAGTCCCAAAAAATTGTCCG
CCAAAGACCTGGCCAAGATCGAAAAAAAGAAGGCCAAGAAGCAGGCACAG
AAGCTGAAGAAGCAGCAAAACAAACTGGCGCCCAAGGAGATCAAAACGGA
ACCAGAAGCGCAGGTTAAAGTCGAAAGTAAGGCCACCAAAAAGGAAAAAG
TGGAGAAGGAACCAACGACTGCTCCAAATGAAAAACCAAAAGGAAAAGTG
TCTAAAAAAGCCAAAGCCAATGCCAATAACAAGGACGAAGAAGGAGTTAA
GCGGATCCGCAATCCTGCAGAAGAGGCGTCCACCGTTTTCGTGGGGAATT
TGCCAATCAACACCAAACGTGTACAGCTGGTGAAATTGTTCCAGCCATAT
GGGTTGGTTCAATCCATCCGGCTGCGCACCGCCGGTGGTAAGCAGCTTTT
CAAGCACAAACAGCGCAAGGTAGCCGGCTCCCTGAACGCCTACGTGGTGC
TCGAGAAACCCGAGATTGCCCAGCAAGCGCTGGCTCTTAATGGCTCCGAG
TTCAAGGAAAATCACCTGCGGGTGACTCCCGCGTCTATGGCGGAGAAATT
CGGCCAGGCAAAGGATAAGCAGCCCAGTGACAAGGATGCCAAGCGAACCA
TTTTCGTTGGCAGCCTAAAGTACTCGGCCACCGAGGAGCAGCTGCGAGAG
ATCTTCTCCAGTTGCGGCGAAATAGACTACATACGCTGCCTACAGGATGG
CGACAAGGGCTGCAAAGGAGTAGCATACGTCTGTTTCCAAAAGCCCGATG
CTGTGGGACTAGCTCTTGAACTTAATCAGACGCTTCTAGATGATAGGCCT
ATCAACGTGGAGCGCTATCAAGTCAAAAAACTGGGTGCTAAGCAAGTGCG
CGATGCTGCCGCCGCCTCAGCTGCTTCGAAAACGTCCTCAAAGACCAAAG
CTAAGAACCAGAATTCTGCGGGCGCAAAAAAAAGGCTAGACAAGAAGAAG
GGCAAGGAAAACGGTAGTTTGAAAAAAGAAGGAGCACCTACTGGTCAAAA
GAAGAAATCAGAGTACCGGGGCGTCAAAGTCGACGGCATCAAGAAGGCTA
AGAAGCCTAAAAAGAAAAGCAATGACCAACAAACGGCTCTTGCCAAAAAA
ATAGCACCCAAGCAAAAGAGTGCAAGCTTTCTAGACCAT
BO34827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12288-RA | 1308 | CG12288-PA | 1..1305 | 17..1321 | 6450 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12288-RA | 1562 | CG12288-RA | 68..1372 | 17..1321 | 6450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16900725..16901221 | 1321..825 | 2410 | 99 | Minus |
| 2L | 23513712 | 2L | 16901728..16902151 | 440..17 | 2120 | 100 | Minus |
| 2L | 23513712 | 2L | 16901281..16901666 | 824..439 | 1930 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 14:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1102..1161 | 417..474 | 115 | 68.3 | Plus |
BO34827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-29 16:44:30 Download gff for
BO34827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12288-RA | 68..1372 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:42:25 Download gff for
BO34827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12288-RA | 68..1372 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:42:25 Download gff for
BO34827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16900723..16901221 | 825..1323 | 98 | <- | Minus |
| 2L | 16901281..16901664 | 441..824 | 100 | <- | Minus |
| 2L | 16901728..16902151 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-29 16:44:30 Download gff for
BO34827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16901728..16902151 | 17..440 | 100 | | Minus |
| arm_2L | 16900723..16901221 | 825..1323 | 98 | <- | Minus |
| arm_2L | 16901281..16901664 | 441..824 | 100 | <- | Minus |
BO34827.pep Sequence
Translation from 16 to 1339
> BO34827.pep
MKTPKAKESEKAELKPIKKEPGVVEDGKVTKKSKTKPKKKTVKVPKDEVK
AAVQESPKKLSAKDLAKIEKKKAKKQAQKLKKQQNKLAPKEIKTEPEAQV
KVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKDEEGVKRIRNP
AEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQR
KVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKD
KQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCK
GVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGAKQVRDAAAA
SAASKTSSKTKAKNQNSAGAKKRLDKKKGKENGSLKKEGAPTGQKKKSEY
RGVKVDGIKKAKKPKKKSNDQQTALAKKIAPKQKSASFLDH
BO34827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12288-PA | 435 | CG12288-PA | 1..435 | 1..435 | 2179 | 100 | Plus |
| Caper-PB | 594 | CG11266-PB | 151..394 | 69..318 | 169 | 23.3 | Plus |
| Caper-PA | 594 | CG11266-PA | 151..394 | 69..318 | 169 | 23.3 | Plus |
