BO34902.complete Sequence
1255 bp assembled on 2014-07-07
GenBank Submission: KX793919
> BO34902.complete
GAAGTTATCAGTCGACATGTTTTACGCCGTCGATTTTGATAAATCATATT
TACGCATTTGTCTAAAGAGTAAAAAAAATATTTCAAGTTTTCCAGAAGAA
ACGTTAGTCATGGAGGAATTTAATTCGAGCGGATCAGTAGTTAATGGTAC
AGGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGGGGACAAA
TATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGGTGAAGGA
GCTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACCAAAGAGT
TGCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGTCAAAGGA
CTCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAACATTATT
GATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGAGAGATGT
TTATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTACTTAAAA
CACAGAGGCTAAGTAATGATCACATCTGTTACTTCTTATATCAGATATTG
CGTGGACTCAAGTACATTCATTCCGCAAACGTCTTGCATCGGGACCTTAA
GCCAAGTAATTTACTGTTGAACAAGACGTGCGACTTAAAAATTTGCGACT
TTGGATTGGCTCGTATTGCAGATCCCGAGCACGATCATACTGGCTTTCTC
ACAGAATACGTTGCTACCCGATGGTATAGAGCACCTGAAATAATGCTTAA
CTCAAAAGGATACACCAAATCTATAGACATATGGTCCGTTGGCTGCATTT
TGGCTGAAATGTTAAGTAATCGGCCAATATTTCCTGGAAAACATTACCTG
GATCAACTTAATCATATTCTTGGAGTATTGGGTTCACCGTCCCGGGACGA
TTTAGAGTGTATTATTAATGAAAAGGCACGGAACTATTTGGAATCTTTAC
CATTTAAGCCAAATGTACCCTGGGCGAAACTATTTCCAAATGCTGATGCG
TTGGCTTTAGATCTCCTTGGAAAAATGTTAACATTTAACCCGCATAAACG
GATTCCTGTCGAGGAAGCTCTTGCACATCCCTATTTAGAGCAATATTATG
ATCCTGGAGATGAGCCCGTCGCTGAAGTGCCATTTCGGATTAATATGGAA
AATGATGACATTTCTCGAGATGCCCTGAAGTCGTTGATTTTTGAAGAAAC
CTTAAAATTTAAGGAACGACAACCAGACAATGCGCCTGCAAGCTTTCTAG
ACCAT
BO34902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-RI | 1131 | CG12559-PI | 1..1128 | 110..1237 | 5625 | 99.9 | Plus |
| rl-RC | 1131 | CG12559-PC | 1..1128 | 110..1237 | 5625 | 99.9 | Plus |
| rl-RD | 1131 | CG12559-PD | 1..1128 | 110..1237 | 5625 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-RI | 2072 | CG12559-RI | 10..1230 | 17..1237 | 6090 | 99.9 | Plus |
| rl-RE | 1573 | CG12559-RE | 10..1213 | 17..1237 | 5800 | 98.5 | Plus |
| rl-RD | 1795 | CG12559-RD | 277..1435 | 79..1237 | 5780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1113198..1113485 | 641..928 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 1212216..1212504 | 641..928 | 1290 | 97.2 | Plus |
| 2R | 25286936 | 2R | 1207919..1208207 | 641..928 | 1260 | 96.5 | Plus |
| U | 3151297 | U | 1722541..1722804 | 667..928 | 1100 | 96.2 | Plus |
| 2R | 25286936 | 2R | 1208257..1208447 | 924..1114 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 1072251..1072441 | 79..269 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 1113535..1113725 | 924..1114 | 955 | 100 | Plus |
| U | 3151297 | U | 1722854..1723044 | 924..1114 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 1212554..1212744 | 924..1114 | 895 | 97.9 | Plus |
| 2R | 25286936 | 2R | 1105844..1105981 | 503..640 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 1076635..1076761 | 268..394 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 1120623..1120747 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1124961..1125085 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1129252..1129376 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1133392..1133516 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1137600..1137724 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1141916..1142040 | 1113..1237 | 610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 1146059..1146183 | 1113..1237 | 610 | 99.2 | Plus |
| U | 3151297 | U | 2631246..2631370 | 1237..1113 | 610 | 99.2 | Minus |
| 2R | 25286936 | 2R | 1080331..1080441 | 395..505 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 1150145..1150219 | 1113..1187 | 345 | 97.3 | Plus |
| 2R | 25286936 | 2R | 1071984..1072045 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:09:13 has no hits.
BO34902.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:25 Download gff for
BO34902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RE | 17..71 | 24..78 | 100 | == | Plus |
| rl-RE | 72..1213 | 96..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:32 Download gff for
BO34902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RI | 17..1230 | 24..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:32 Download gff for
BO34902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1076635..1076761 | 268..394 | 100 | -> | Plus |
| 2R | 1080331..1080441 | 395..505 | 100 | -> | Plus |
| 2R | 1105847..1105981 | 506..640 | 100 | -> | Plus |
| 2R | 1113198..1113482 | 641..925 | 100 | -> | Plus |
| 2R | 1113537..1113725 | 926..1114 | 100 | -> | Plus |
| 2R | 1120625..1120747 | 1115..1239 | 97 | | Plus |
| 2R | 1071991..1072045 | 24..78 | 100 | -> | Plus |
| 2R | 1072251..1072439 | 79..267 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:25 Download gff for
BO34902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 239912..240196 | 641..925 | 100 | -> | Plus |
| 2RHet | 240251..240439 | 926..1114 | 100 | -> | Plus |
| 2RHet | 247339..247461 | 1115..1239 | 97 | | Plus |
| 2RHet | 198705..198759 | 24..78 | 100 | -> | Plus |
| 2RHet | 198965..199153 | 79..267 | 100 | -> | Plus |
| 2RHet | 203349..203475 | 268..394 | 100 | -> | Plus |
| 2RHet | 207045..207155 | 395..505 | 100 | -> | Plus |
| 2RHet | 232561..232695 | 506..640 | 100 | -> | Plus |
BO34902.pep Sequence
Translation from 16 to 1255
> BO34902.pep
MFYAVDFDKSYLRICLKSKKNISSFPEETLVMEEFNSSGSVVNGTGSTEV
PQSNAEVIRGQIFEVGPRYIKLAYIGEGAYGMVVSADDTLTNQRVAIKKI
SPFEHQTYCQRTLREITILTRFKHENIIDIRDILRVDSIDQMRDVYIVQC
LMETDLYKLLKTQRLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLL
LNKTCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYT
KSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGVLGSPSRDDLECII
NEKARNYLESLPFKPNVPWAKLFPNADALALDLLGKMLTFNPHKRIPVEE
ALAHPYLEQYYDPGDEPVAEVPFRINMENDDISRDALKSLIFEETLKFKE
RQPDNAPASFLDH
BO34902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-PI | 376 | CG12559-PI | 1..376 | 32..407 | 1980 | 100 | Plus |
| rl-PC | 376 | CG12559-PC | 1..376 | 32..407 | 1980 | 100 | Plus |
| rl-PD | 376 | CG12559-PD | 1..376 | 32..407 | 1980 | 100 | Plus |
| rl-PE | 376 | CG12559-PE | 1..376 | 32..407 | 1980 | 100 | Plus |
| rl-PG | 331 | CG12559-PG | 6..331 | 82..407 | 1713 | 99.1 | Plus |
