BO34915.complete Sequence
5527 bp assembled on 2014-07-17
GenBank Submission: KX794182
> BO34915.complete
GAAGTTATCAGTCGACATGGCCGAATTTCTGGACTCCGAGGCCGAGGAAT
CGGAGGAGGAGGAAGAATTGGACGTCAACGAGCGCAAGAGACTCAAGAAA
CTGAAGGCGGCCGTCTCCGATAGTAGCGAAGAAGAAGAAGACGACGAGGA
ACGGCTGCGCGAAGAGCTCAAAGATCTGATCGACGACAATCCCATCGAGG
AGGACGATGGCAGTGGTTACGATTCCGATGGCGTCGGCAGCGGCAAGAAG
CGCAAAAAGCACGAGGACGACGATCTGGACGATCGACTGGAGGACGACGA
CTACGATCTTATCGAGGAGAATCTGGGCGTCAAAGTCGAGAGACGGAAGC
GGTTCAAGCGTCTGCGTCGCATCCACGACAACGAAAGCGATGGCGAGGAG
CAGCACGTGGACGAGGGTCTGGTGCGTGAGCAGATTGCCGAGCAGTTGTT
CGACGAGAACGATGAGAGCATTGGTCATCGCAGCGAGCGCAGTCACAGGG
AGGCGGACGACTACGACGACGTGGATACGGAGTCGGACGCAGATGACTTC
ATTGTGGACGATAATGGGCGTCCCATAGCCGAGAAGAAGAAGAAACGGCG
CCCCATCTTTACAGACGCATCACTTCAAGAGGGTCAGGACATCTTTGGCG
TAGACTTCGACTATGACGACTTCTCAAAGTACGAGGAAGACGACTACGAA
GATGACTCGGAAGGAGATGAGTACGATGAGGATCTGGGCGTCGGCGATGA
TACGCGCGTCAAGAAGAAGAAAGCGCTCAAAAAGAAGGTGGTCAAGAAGA
CAATCTTCGACATATACGAGCCCAGCGAGCTCAAGCGTGGTCATTTCACC
GATATGGACAACGAGATTCGCAAGACAGACATCCCAGAAAGAATGCAGCT
GCGAGAGGTGCCCGTAACCCCGGTGCCCGAGGGATCAGACGAGCTGGACC
TCGAGGCTGAATGGATCTACAAATATGCCTTCTGCAAGCACACTGTTTCG
GAACAGGAAAAGCCGGAGAGCCGCGAGAAAATGCGCAAACCACCGACAAC
CGTTAACAAGATTAAGCAGACGCTAGAATTTATACGCAACCAGCAGTTGG
AGGTGCCCTTTATAGCCTTCTATCGCAAGGAGTATGTGAAGCCAGAGCTT
AATATCGACGATCTCTGGAAGGTTTACTACTACGATGGGATCTGGTGTCA
GCTAAACGAGCGAAAGCGCAAGCTAAAGGTGCTTTTCGAAAAGATGCGTC
AGTTCCAGCTGGACACGCTATGCGCCGACACAGATCAACCCGTACCGGAT
GATGTTCGCCTCATCCTGGACAGCGATTTCGAGCGCCTCGCCGACGTACA
GTCGATGGAGGAGCTAAAGGACGTGCACATGTACTTTCTGCTGAACTATT
CGCATGAGCTGCCCCGCATGCAGGCGGAGCAGCGACGAAAAGCTATACAG
GAGCGTCGCGAGGCCAAGGCGCGTCGCCAGGCAGCCGCCGCTGAGAACGG
TGATGATGCGGCCGAGGCGATAGTTGTACCAGAGCCGGAAGACGATGACG
ATCCCGAGCTGATCGATTACCAACTAAAGCAGGCGTCCAACAGCAGTCCC
TATGCGGTATTCCGCAAGGCGGGCATCTGCGGCTTTGCCAAACACTTTGG
TCTCACGCCGGAGCAGTATGCCGAAAATCTGCGCGACAATTACCAGCGCA
ATGAGATCACCCAGGAAAGCATCGGTCCCACAGAGCTGGCCAAGCAATAT
TTGTCGCCGCGCTTCATGACCACGGATGAGGTTATCCATGCCGCAAAATA
CGTTGTGGCCCGACAGCTGGCACAAGAGCCTCTGCTGCGCAAGACCATGC
GTGAGGTGTATTTCGACAGAGCTAGGATTAACATACGGCCCACCAAGAAT
GGCATGGTGCTGATCGATGAGAATTCGCCGGTGTATTCGATGAAGTACGT
GGCCAAGAAGCCGGTAAGCGATCTATTTGGCGATCAATTCATAAAGCTAA
TGATGGCCGAGGAGGAGAAGCTGCTGGAGATAACGTTCCTCGAGGAGTTC
GAGGGCAATGCGTGTGCCAACGGAACACCCGGTGACTATGTGGAAGAGTC
CAAGGCCCTGTACCAGCTGGATCAGTTTGCCAAGCACGTGCAGGAGTGGA
ATAAGCTGCGGGCGGAATGCGTACAGCTGGCGCTGCAGAAGTGGGTCATT
CCGGATCTGATCAAGGAGCTGCGCTCAACTCTGCACGAGGAGGCTCAGCA
ATTTGTGCTGCGTTCCTGCACGGGTAAGCTGTATAAGTGGCTAAAGGTGG
CACCCTATAAACCGCAACTGCCCCCCGACTTTGGCTACGAGGAGTGGAGC
ACGCTGAGGGGCATACGGGTGCTGGGTCTGGCCTACGATCCCGATCACTC
AGTGGCCGCTTTCTGTGCGGTGACTACCGTGGAGGGCGACATCTCCGACT
ACCTGCGACTGCCGAACATTCTGAAGCGCAAGAATTCTTACAACCTTGAG
GAGAAGGCCCAGAAGTTGGCCGACCTTCGAAAGCTGAGTGACTTTATCAA
AATGAAGAAGCCACACATTGTTGTCATCGGAGCGGAATCGCGCGATGCCC
AGAACATCCAGGCAGACATTAAGGAGATTCTGCATGAACTCGAGACCTCC
GAACAATTTCCGCCCATCGAGGTGGAGATAATCGACAACGAGCTGGCCAA
GATCTATGCCAACTCGAAGAAGGGCGAGTCTGACTTTAAGGAGTATCCTC
CTCTGCTGAAGCAGGCTGCTTCGCTGGCCCGCAAGATGCAGGATCCGCTA
GTGGAATACTCACAGCTGTGTGATGCGGACGACGAGATTCTCTGCCTGCG
CTACCATCCGCTACAGGAGCGTGTGCCGCGCGAACAGCTGCTGGAGCAGC
TCAGCCTGCAGTTTATCAATCGAACGAGCGAGGTGGGTCTGGACATTAAC
CTGATGGTGCAGAACTCACGGACCATCAACCTGCTGCAGTACATCTGTGG
CTTGGGTCCGCGCAAGGGTCAGGCTTTACTTAAACTTCTTAAGCAGAGCA
ACCAGCGGTTGGAGAACCGCACCCAGCTGGTCACCGTGTGTCATCTGGGG
CCCAGGGTCTTTATCAACTGCAGCGGTTTCATTAAGATCGATACCTCATC
GCTGGGCGACAGCACAGAGGCGTATGTCGAGGTGCTGGACGGGTCGCGTG
TGCATCCAGAAACGTACGAGTGGGCCAGAAAGATGGCCATCGATGCCATG
GAGTACGACGACGAGGAGACCAATCCGGCCGGTGCCCTTGAGGAAATTCT
CGAGTCGCCAGAGCGCCTTAAGGATCTCGATCTGGACGCATTCGCTGTGG
AACTGGAGCGCCAGGGATTCGGCAGCAAGAGCATAACCTTGTACGACATA
AGGAACGAGTTGAGCTGCCTGTACAAGGACTACCGCACTCCGTACACAAA
GCCCAGTGCGGAGGAGCTCTTCGATATGCTGACCAAGGAGACGCCCGACT
CGTTTTATGTGGGCAAGTGCGTCACGGCCATGGTCACCGGTTTCACCTAC
CGTCGGCCGCAGGGCGATCAGCTAGACAGCGCAAATCCGGTGCGTCTAGA
TTCCAACGAAAGCTGGCAGTGCCCCTTCTGCCACAAGGACGACTTCCCAG
AGCTGTCCGAGGTGTGGAATCACTTTGACGCGAACGCGTGCCCTGGCCAG
CCATCTGGTGTGCGTGTGCGTCTGGAGAACGGCCTGCCTGGCTTTATACA
CATCAAGAACTTGTCCGATAGACAGGTTCGCAATCCCGAAGAACGTGTGC
GCGTCTCACAGATGATTCATGTTCGCATCATTAAGATAGACATTGACCGG
TTCTCAGTCGAATGCTCTTCGAGGACCGCTGATCTTAAGGATGTGAACAA
TGAGTGGCGGCCGCGTCGCGACAACTACTATGATTATGTGACTGAGGAGC
AGGACAATCGGAAAGTGAGCGATGCCAAGGCCAGGGCTCTGAAGCGCAAA
ATTTACGCGCGTCGCGTAATCGCCCATCCCAGCTTCTTCAACAAGTCGTA
CGCGGAGGTGGTGGCCATGCTAGCGGAGGCCGATCAGGGCGAGGTGGCCC
TGCGTCCGAGCAGCAAGTCCAAGGACCATCTGACAGCCACCTGGAAGGTG
GCCGACGACATCTTCCAGCACATCGATGTGCGCGAGGAGGGTAAAGAGAA
CGATTTCAGCCTGGGCAGAAGTCTGTGGATCGGCACCGAGGAGTTCGAGG
ATCTGGACGAGATCATCGCCCGCCACATCATGCCGATGGCCTTGGCTGCC
CGCGAACTGATACAGTACAAGTACTACAAGCCAAACATGGTGACCGGCGA
TGAAAATGAACGGGATGTCATGGAAAAGTTGCTGCGCGAGGAGAAGGCAA
ATGATCCGAAGAAGATACACTACTTTTTTACGGCCTCACGCGCCATGCCG
GGCAAGTTCCTGCTGTCCTATCTGCCCAAGACGAAGGTGCGTCACGAGTA
TGTGACGGTCATGCCGGAGGGCTATCGTTTCCGTGGCCAGATTTTCGATA
CGGTTAACAGTCTGCTGCGTTGGTTTAAGGAACACTGGCTGGATCCAACG
GCCACGCCGGCCAGCGCCTCGGCGTCCAACTTAACGCCACTGCACTTGAT
GCGTCCGCCGCCGACGATCTCGTCGTCATCCCAGACCTCCTTGGGCCCCC
AGGCGCCCTACAGCGTCACTGGCAGCGTGACTGGTGGAACGCCGCGCAGT
GGCATCAGCAGTGCCGTCGGCGGTGGCGGTTCCAGCGCCTACTCCATTAC
GCAATCCATCACTGGCTACGGCACGTCGGGCAGTTCTGCTCCAGGGGCTG
GAGTATCTTCCTCCCACTATGGCAGCTCATCGACGCCGTCGTTTGGCGCC
ATCAATACGCCATACACGCCCAGTGGACAGACTCCGTTCATGACGCCCTA
CACGCCGCATGCCTCACAGACGCCTCGCTATGGTCACAATGTGCCCAGTC
CCAGCTCGCAATCATCGAGCAGTCAGAGGCATCACTACGGCAGCAGTTCC
GGAACGGGCAGCACGCCCAGGTATCACGATATGGGAGGAGGAGGCGGTGG
CGGCGTTGGTGGTGGTGGTGGTTCCAATGCCTACAGCATGCAGCCGCATC
ACCAGCAACGTGCCAAAGAGAACCTCGACTGGCAGCTGGCCAACGATGCC
TGGGCAAGACGCAGACCGCAGCAGCATCAGTCACATCAGTCGTATCACGC
CCAGCAGCAGCATCATCACTCGCAGCAGCAACCCCATATGGGCATGAGCA
TGAACATGGGCATTACAATGTCACTGGGACGTGGCACCGGTGGCGGCGGA
GGAGGTGGCTATGGATCGACGCCTGTCAATGATTACAGCACCGGAGGCGG
TCATAATCGGGGTATGTCCTCGAAGGCGTCTGTGCGCAGTACGCCGCGCA
CCAACGCCTCGCCGCACTCCATGAATCTGGGCGATGCCACGCCCCTCTAC
GACGAGAACGCAAGCTTTCTAGACCAT
BO34915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt6-RB | 5496 | CG12225-PB | 1..5493 | 17..5509 | 27465 | 100 | Plus |
Spt6-RA | 5496 | CG12225-PA | 1..5493 | 17..5509 | 27465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt6-RB | 6070 | CG12225-RB | 111..5603 | 17..5509 | 27465 | 100 | Plus |
Spt6-RA | 6166 | CG12225-RA | 111..5603 | 17..5509 | 27465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6269531..6274421 | 619..5509 | 24455 | 100 | Plus |
X | 23542271 | X | 6268765..6268972 | 139..346 | 1040 | 100 | Plus |
X | 23542271 | X | 6269312..6269465 | 465..618 | 770 | 100 | Plus |
X | 23542271 | X | 6269124..6269244 | 346..466 | 605 | 100 | Plus |
X | 23542271 | X | 6268105..6268191 | 54..140 | 435 | 100 | Plus |
X | 23542271 | X | 6267907..6267946 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:12:54 has no hits.
BO34915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:17 Download gff for
BO34915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt6-RA | 94..5586 | 17..5511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:50 Download gff for
BO34915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt6-RA | 111..5603 | 17..5511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:50 Download gff for
BO34915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6269314..6269465 | 467..618 | 100 | -> | Plus |
X | 6269531..6274421 | 619..5511 | 99 | | Plus |
X | 6268107..6268191 | 56..140 | 100 | -> | Plus |
X | 6268767..6268972 | 141..346 | 100 | -> | Plus |
X | 6269125..6269244 | 347..466 | 100 | -> | Plus |
X | 6267907..6267945 | 17..55 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:17 Download gff for
BO34915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6163347..6163498 | 467..618 | 100 | -> | Plus |
arm_X | 6163564..6168454 | 619..5511 | 99 | | Plus |
arm_X | 6162140..6162224 | 56..140 | 100 | -> | Plus |
arm_X | 6162800..6163005 | 141..346 | 100 | -> | Plus |
arm_X | 6163158..6163277 | 347..466 | 100 | -> | Plus |
arm_X | 6161940..6161978 | 17..55 | 100 | -> | Plus |
BO34915.pep Sequence
Translation from 16 to 5527
> BO34915.pep
MAEFLDSEAEESEEEEELDVNERKRLKKLKAAVSDSSEEEEDDEERLREE
LKDLIDDNPIEEDDGSGYDSDGVGSGKKRKKHEDDDLDDRLEDDDYDLIE
ENLGVKVERRKRFKRLRRIHDNESDGEEQHVDEGLVREQIAEQLFDENDE
SIGHRSERSHREADDYDDVDTESDADDFIVDDNGRPIAEKKKKRRPIFTD
ASLQEGQDIFGVDFDYDDFSKYEEDDYEDDSEGDEYDEDLGVGDDTRVKK
KKALKKKVVKKTIFDIYEPSELKRGHFTDMDNEIRKTDIPERMQLREVPV
TPVPEGSDELDLEAEWIYKYAFCKHTVSEQEKPESREKMRKPPTTVNKIK
QTLEFIRNQQLEVPFIAFYRKEYVKPELNIDDLWKVYYYDGIWCQLNERK
RKLKVLFEKMRQFQLDTLCADTDQPVPDDVRLILDSDFERLADVQSMEEL
KDVHMYFLLNYSHELPRMQAEQRRKAIQERREAKARRQAAAAENGDDAAE
AIVVPEPEDDDDPELIDYQLKQASNSSPYAVFRKAGICGFAKHFGLTPEQ
YAENLRDNYQRNEITQESIGPTELAKQYLSPRFMTTDEVIHAAKYVVARQ
LAQEPLLRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKKPV
SDLFGDQFIKLMMAEEEKLLEITFLEEFEGNACANGTPGDYVEESKALYQ
LDQFAKHVQEWNKLRAECVQLALQKWVIPDLIKELRSTLHEEAQQFVLRS
CTGKLYKWLKVAPYKPQLPPDFGYEEWSTLRGIRVLGLAYDPDHSVAAFC
AVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKLSDFIKMKKPH
IVVIGAESRDAQNIQADIKEILHELETSEQFPPIEVEIIDNELAKIYANS
KKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQ
ERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRK
GQALLKLLKQSNQRLENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDST
EAYVEVLDGSRVHPETYEWARKMAIDAMEYDDEETNPAGALEEILESPER
LKDLDLDAFAVELERQGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEE
LFDMLTKETPDSFYVGKCVTAMVTGFTYRRPQGDQLDSANPVRLDSNESW
QCPFCHKDDFPELSEVWNHFDANACPGQPSGVRVRLENGLPGFIHIKNLS
DRQVRNPEERVRVSQMIHVRIIKIDIDRFSVECSSRTADLKDVNNEWRPR
RDNYYDYVTEEQDNRKVSDAKARALKRKIYARRVIAHPSFFNKSYAEVVA
MLAEADQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKENDFSLG
RSLWIGTEEFEDLDEIIARHIMPMALAARELIQYKYYKPNMVTGDENERD
VMEKLLREEKANDPKKIHYFFTASRAMPGKFLLSYLPKTKVRHEYVTVMP
EGYRFRGQIFDTVNSLLRWFKEHWLDPTATPASASASNLTPLHLMRPPPT
ISSSSQTSLGPQAPYSVTGSVTGGTPRSGISSAVGGGGSSAYSITQSITG
YGTSGSSAPGAGVSSSHYGSSSTPSFGAINTPYTPSGQTPFMTPYTPHAS
QTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYHDMGGGGGGGVGGG
GGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHH
HSQQQPHMGMSMNMGITMSLGRGTGGGGGGGYGSTPVNDYSTGGGHNRGM
SSKASVRSTPRTNASPHSMNLGDATPLYDENASFLDH
BO34915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt6-PB | 1831 | CG12225-PB | 1..1831 | 1..1831 | 9621 | 100 | Plus |
Spt6-PA | 1831 | CG12225-PA | 1..1831 | 1..1831 | 9621 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 722..939 | 3..249 | 180 | 28.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 758..956 | 6..239 | 180 | 24.8 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 758..956 | 6..239 | 180 | 24.8 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 722..939 | 3..249 | 180 | 28.1 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 768..974 | 6..235 | 177 | 27.6 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 768..974 | 6..235 | 177 | 27.6 | Plus |