Clone BO34915 Report

Search the DGRC for BO34915

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptSpt6-RA
Protein status:BO34915.pep: Imported from assembly
Sequenced Size:5527

Clone Sequence Records

BO34915.complete Sequence

5527 bp assembled on 2014-07-17

GenBank Submission: KX794182

> BO34915.complete
GAAGTTATCAGTCGACATGGCCGAATTTCTGGACTCCGAGGCCGAGGAAT
CGGAGGAGGAGGAAGAATTGGACGTCAACGAGCGCAAGAGACTCAAGAAA
CTGAAGGCGGCCGTCTCCGATAGTAGCGAAGAAGAAGAAGACGACGAGGA
ACGGCTGCGCGAAGAGCTCAAAGATCTGATCGACGACAATCCCATCGAGG
AGGACGATGGCAGTGGTTACGATTCCGATGGCGTCGGCAGCGGCAAGAAG
CGCAAAAAGCACGAGGACGACGATCTGGACGATCGACTGGAGGACGACGA
CTACGATCTTATCGAGGAGAATCTGGGCGTCAAAGTCGAGAGACGGAAGC
GGTTCAAGCGTCTGCGTCGCATCCACGACAACGAAAGCGATGGCGAGGAG
CAGCACGTGGACGAGGGTCTGGTGCGTGAGCAGATTGCCGAGCAGTTGTT
CGACGAGAACGATGAGAGCATTGGTCATCGCAGCGAGCGCAGTCACAGGG
AGGCGGACGACTACGACGACGTGGATACGGAGTCGGACGCAGATGACTTC
ATTGTGGACGATAATGGGCGTCCCATAGCCGAGAAGAAGAAGAAACGGCG
CCCCATCTTTACAGACGCATCACTTCAAGAGGGTCAGGACATCTTTGGCG
TAGACTTCGACTATGACGACTTCTCAAAGTACGAGGAAGACGACTACGAA
GATGACTCGGAAGGAGATGAGTACGATGAGGATCTGGGCGTCGGCGATGA
TACGCGCGTCAAGAAGAAGAAAGCGCTCAAAAAGAAGGTGGTCAAGAAGA
CAATCTTCGACATATACGAGCCCAGCGAGCTCAAGCGTGGTCATTTCACC
GATATGGACAACGAGATTCGCAAGACAGACATCCCAGAAAGAATGCAGCT
GCGAGAGGTGCCCGTAACCCCGGTGCCCGAGGGATCAGACGAGCTGGACC
TCGAGGCTGAATGGATCTACAAATATGCCTTCTGCAAGCACACTGTTTCG
GAACAGGAAAAGCCGGAGAGCCGCGAGAAAATGCGCAAACCACCGACAAC
CGTTAACAAGATTAAGCAGACGCTAGAATTTATACGCAACCAGCAGTTGG
AGGTGCCCTTTATAGCCTTCTATCGCAAGGAGTATGTGAAGCCAGAGCTT
AATATCGACGATCTCTGGAAGGTTTACTACTACGATGGGATCTGGTGTCA
GCTAAACGAGCGAAAGCGCAAGCTAAAGGTGCTTTTCGAAAAGATGCGTC
AGTTCCAGCTGGACACGCTATGCGCCGACACAGATCAACCCGTACCGGAT
GATGTTCGCCTCATCCTGGACAGCGATTTCGAGCGCCTCGCCGACGTACA
GTCGATGGAGGAGCTAAAGGACGTGCACATGTACTTTCTGCTGAACTATT
CGCATGAGCTGCCCCGCATGCAGGCGGAGCAGCGACGAAAAGCTATACAG
GAGCGTCGCGAGGCCAAGGCGCGTCGCCAGGCAGCCGCCGCTGAGAACGG
TGATGATGCGGCCGAGGCGATAGTTGTACCAGAGCCGGAAGACGATGACG
ATCCCGAGCTGATCGATTACCAACTAAAGCAGGCGTCCAACAGCAGTCCC
TATGCGGTATTCCGCAAGGCGGGCATCTGCGGCTTTGCCAAACACTTTGG
TCTCACGCCGGAGCAGTATGCCGAAAATCTGCGCGACAATTACCAGCGCA
ATGAGATCACCCAGGAAAGCATCGGTCCCACAGAGCTGGCCAAGCAATAT
TTGTCGCCGCGCTTCATGACCACGGATGAGGTTATCCATGCCGCAAAATA
CGTTGTGGCCCGACAGCTGGCACAAGAGCCTCTGCTGCGCAAGACCATGC
GTGAGGTGTATTTCGACAGAGCTAGGATTAACATACGGCCCACCAAGAAT
GGCATGGTGCTGATCGATGAGAATTCGCCGGTGTATTCGATGAAGTACGT
GGCCAAGAAGCCGGTAAGCGATCTATTTGGCGATCAATTCATAAAGCTAA
TGATGGCCGAGGAGGAGAAGCTGCTGGAGATAACGTTCCTCGAGGAGTTC
GAGGGCAATGCGTGTGCCAACGGAACACCCGGTGACTATGTGGAAGAGTC
CAAGGCCCTGTACCAGCTGGATCAGTTTGCCAAGCACGTGCAGGAGTGGA
ATAAGCTGCGGGCGGAATGCGTACAGCTGGCGCTGCAGAAGTGGGTCATT
CCGGATCTGATCAAGGAGCTGCGCTCAACTCTGCACGAGGAGGCTCAGCA
ATTTGTGCTGCGTTCCTGCACGGGTAAGCTGTATAAGTGGCTAAAGGTGG
CACCCTATAAACCGCAACTGCCCCCCGACTTTGGCTACGAGGAGTGGAGC
ACGCTGAGGGGCATACGGGTGCTGGGTCTGGCCTACGATCCCGATCACTC
AGTGGCCGCTTTCTGTGCGGTGACTACCGTGGAGGGCGACATCTCCGACT
ACCTGCGACTGCCGAACATTCTGAAGCGCAAGAATTCTTACAACCTTGAG
GAGAAGGCCCAGAAGTTGGCCGACCTTCGAAAGCTGAGTGACTTTATCAA
AATGAAGAAGCCACACATTGTTGTCATCGGAGCGGAATCGCGCGATGCCC
AGAACATCCAGGCAGACATTAAGGAGATTCTGCATGAACTCGAGACCTCC
GAACAATTTCCGCCCATCGAGGTGGAGATAATCGACAACGAGCTGGCCAA
GATCTATGCCAACTCGAAGAAGGGCGAGTCTGACTTTAAGGAGTATCCTC
CTCTGCTGAAGCAGGCTGCTTCGCTGGCCCGCAAGATGCAGGATCCGCTA
GTGGAATACTCACAGCTGTGTGATGCGGACGACGAGATTCTCTGCCTGCG
CTACCATCCGCTACAGGAGCGTGTGCCGCGCGAACAGCTGCTGGAGCAGC
TCAGCCTGCAGTTTATCAATCGAACGAGCGAGGTGGGTCTGGACATTAAC
CTGATGGTGCAGAACTCACGGACCATCAACCTGCTGCAGTACATCTGTGG
CTTGGGTCCGCGCAAGGGTCAGGCTTTACTTAAACTTCTTAAGCAGAGCA
ACCAGCGGTTGGAGAACCGCACCCAGCTGGTCACCGTGTGTCATCTGGGG
CCCAGGGTCTTTATCAACTGCAGCGGTTTCATTAAGATCGATACCTCATC
GCTGGGCGACAGCACAGAGGCGTATGTCGAGGTGCTGGACGGGTCGCGTG
TGCATCCAGAAACGTACGAGTGGGCCAGAAAGATGGCCATCGATGCCATG
GAGTACGACGACGAGGAGACCAATCCGGCCGGTGCCCTTGAGGAAATTCT
CGAGTCGCCAGAGCGCCTTAAGGATCTCGATCTGGACGCATTCGCTGTGG
AACTGGAGCGCCAGGGATTCGGCAGCAAGAGCATAACCTTGTACGACATA
AGGAACGAGTTGAGCTGCCTGTACAAGGACTACCGCACTCCGTACACAAA
GCCCAGTGCGGAGGAGCTCTTCGATATGCTGACCAAGGAGACGCCCGACT
CGTTTTATGTGGGCAAGTGCGTCACGGCCATGGTCACCGGTTTCACCTAC
CGTCGGCCGCAGGGCGATCAGCTAGACAGCGCAAATCCGGTGCGTCTAGA
TTCCAACGAAAGCTGGCAGTGCCCCTTCTGCCACAAGGACGACTTCCCAG
AGCTGTCCGAGGTGTGGAATCACTTTGACGCGAACGCGTGCCCTGGCCAG
CCATCTGGTGTGCGTGTGCGTCTGGAGAACGGCCTGCCTGGCTTTATACA
CATCAAGAACTTGTCCGATAGACAGGTTCGCAATCCCGAAGAACGTGTGC
GCGTCTCACAGATGATTCATGTTCGCATCATTAAGATAGACATTGACCGG
TTCTCAGTCGAATGCTCTTCGAGGACCGCTGATCTTAAGGATGTGAACAA
TGAGTGGCGGCCGCGTCGCGACAACTACTATGATTATGTGACTGAGGAGC
AGGACAATCGGAAAGTGAGCGATGCCAAGGCCAGGGCTCTGAAGCGCAAA
ATTTACGCGCGTCGCGTAATCGCCCATCCCAGCTTCTTCAACAAGTCGTA
CGCGGAGGTGGTGGCCATGCTAGCGGAGGCCGATCAGGGCGAGGTGGCCC
TGCGTCCGAGCAGCAAGTCCAAGGACCATCTGACAGCCACCTGGAAGGTG
GCCGACGACATCTTCCAGCACATCGATGTGCGCGAGGAGGGTAAAGAGAA
CGATTTCAGCCTGGGCAGAAGTCTGTGGATCGGCACCGAGGAGTTCGAGG
ATCTGGACGAGATCATCGCCCGCCACATCATGCCGATGGCCTTGGCTGCC
CGCGAACTGATACAGTACAAGTACTACAAGCCAAACATGGTGACCGGCGA
TGAAAATGAACGGGATGTCATGGAAAAGTTGCTGCGCGAGGAGAAGGCAA
ATGATCCGAAGAAGATACACTACTTTTTTACGGCCTCACGCGCCATGCCG
GGCAAGTTCCTGCTGTCCTATCTGCCCAAGACGAAGGTGCGTCACGAGTA
TGTGACGGTCATGCCGGAGGGCTATCGTTTCCGTGGCCAGATTTTCGATA
CGGTTAACAGTCTGCTGCGTTGGTTTAAGGAACACTGGCTGGATCCAACG
GCCACGCCGGCCAGCGCCTCGGCGTCCAACTTAACGCCACTGCACTTGAT
GCGTCCGCCGCCGACGATCTCGTCGTCATCCCAGACCTCCTTGGGCCCCC
AGGCGCCCTACAGCGTCACTGGCAGCGTGACTGGTGGAACGCCGCGCAGT
GGCATCAGCAGTGCCGTCGGCGGTGGCGGTTCCAGCGCCTACTCCATTAC
GCAATCCATCACTGGCTACGGCACGTCGGGCAGTTCTGCTCCAGGGGCTG
GAGTATCTTCCTCCCACTATGGCAGCTCATCGACGCCGTCGTTTGGCGCC
ATCAATACGCCATACACGCCCAGTGGACAGACTCCGTTCATGACGCCCTA
CACGCCGCATGCCTCACAGACGCCTCGCTATGGTCACAATGTGCCCAGTC
CCAGCTCGCAATCATCGAGCAGTCAGAGGCATCACTACGGCAGCAGTTCC
GGAACGGGCAGCACGCCCAGGTATCACGATATGGGAGGAGGAGGCGGTGG
CGGCGTTGGTGGTGGTGGTGGTTCCAATGCCTACAGCATGCAGCCGCATC
ACCAGCAACGTGCCAAAGAGAACCTCGACTGGCAGCTGGCCAACGATGCC
TGGGCAAGACGCAGACCGCAGCAGCATCAGTCACATCAGTCGTATCACGC
CCAGCAGCAGCATCATCACTCGCAGCAGCAACCCCATATGGGCATGAGCA
TGAACATGGGCATTACAATGTCACTGGGACGTGGCACCGGTGGCGGCGGA
GGAGGTGGCTATGGATCGACGCCTGTCAATGATTACAGCACCGGAGGCGG
TCATAATCGGGGTATGTCCTCGAAGGCGTCTGTGCGCAGTACGCCGCGCA
CCAACGCCTCGCCGCACTCCATGAATCTGGGCGATGCCACGCCCCTCTAC
GACGAGAACGCAAGCTTTCTAGACCAT

BO34915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spt6-RB 5496 CG12225-PB 1..5493 17..5509 27465 100 Plus
Spt6-RA 5496 CG12225-PA 1..5493 17..5509 27465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spt6-RB 6070 CG12225-RB 111..5603 17..5509 27465 100 Plus
Spt6-RA 6166 CG12225-RA 111..5603 17..5509 27465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6269531..6274421 619..5509 24455 100 Plus
X 23542271 X 6268765..6268972 139..346 1040 100 Plus
X 23542271 X 6269312..6269465 465..618 770 100 Plus
X 23542271 X 6269124..6269244 346..466 605 100 Plus
X 23542271 X 6268105..6268191 54..140 435 100 Plus
X 23542271 X 6267907..6267946 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-28 15:12:54 has no hits.

BO34915.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:17 Download gff for BO34915.complete
Subject Subject Range Query Range Percent Splice Strand
Spt6-RA 94..5586 17..5511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:50 Download gff for BO34915.complete
Subject Subject Range Query Range Percent Splice Strand
Spt6-RA 111..5603 17..5511 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:50 Download gff for BO34915.complete
Subject Subject Range Query Range Percent Splice Strand
X 6269314..6269465 467..618 100 -> Plus
X 6269531..6274421 619..5511 99   Plus
X 6268107..6268191 56..140 100 -> Plus
X 6268767..6268972 141..346 100 -> Plus
X 6269125..6269244 347..466 100 -> Plus
X 6267907..6267945 17..55 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:17 Download gff for BO34915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6163347..6163498 467..618 100 -> Plus
arm_X 6163564..6168454 619..5511 99   Plus
arm_X 6162140..6162224 56..140 100 -> Plus
arm_X 6162800..6163005 141..346 100 -> Plus
arm_X 6163158..6163277 347..466 100 -> Plus
arm_X 6161940..6161978 17..55 100 -> Plus

BO34915.pep Sequence

Translation from 16 to 5527

> BO34915.pep
MAEFLDSEAEESEEEEELDVNERKRLKKLKAAVSDSSEEEEDDEERLREE
LKDLIDDNPIEEDDGSGYDSDGVGSGKKRKKHEDDDLDDRLEDDDYDLIE
ENLGVKVERRKRFKRLRRIHDNESDGEEQHVDEGLVREQIAEQLFDENDE
SIGHRSERSHREADDYDDVDTESDADDFIVDDNGRPIAEKKKKRRPIFTD
ASLQEGQDIFGVDFDYDDFSKYEEDDYEDDSEGDEYDEDLGVGDDTRVKK
KKALKKKVVKKTIFDIYEPSELKRGHFTDMDNEIRKTDIPERMQLREVPV
TPVPEGSDELDLEAEWIYKYAFCKHTVSEQEKPESREKMRKPPTTVNKIK
QTLEFIRNQQLEVPFIAFYRKEYVKPELNIDDLWKVYYYDGIWCQLNERK
RKLKVLFEKMRQFQLDTLCADTDQPVPDDVRLILDSDFERLADVQSMEEL
KDVHMYFLLNYSHELPRMQAEQRRKAIQERREAKARRQAAAAENGDDAAE
AIVVPEPEDDDDPELIDYQLKQASNSSPYAVFRKAGICGFAKHFGLTPEQ
YAENLRDNYQRNEITQESIGPTELAKQYLSPRFMTTDEVIHAAKYVVARQ
LAQEPLLRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKKPV
SDLFGDQFIKLMMAEEEKLLEITFLEEFEGNACANGTPGDYVEESKALYQ
LDQFAKHVQEWNKLRAECVQLALQKWVIPDLIKELRSTLHEEAQQFVLRS
CTGKLYKWLKVAPYKPQLPPDFGYEEWSTLRGIRVLGLAYDPDHSVAAFC
AVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKLSDFIKMKKPH
IVVIGAESRDAQNIQADIKEILHELETSEQFPPIEVEIIDNELAKIYANS
KKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQ
ERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRK
GQALLKLLKQSNQRLENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDST
EAYVEVLDGSRVHPETYEWARKMAIDAMEYDDEETNPAGALEEILESPER
LKDLDLDAFAVELERQGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEE
LFDMLTKETPDSFYVGKCVTAMVTGFTYRRPQGDQLDSANPVRLDSNESW
QCPFCHKDDFPELSEVWNHFDANACPGQPSGVRVRLENGLPGFIHIKNLS
DRQVRNPEERVRVSQMIHVRIIKIDIDRFSVECSSRTADLKDVNNEWRPR
RDNYYDYVTEEQDNRKVSDAKARALKRKIYARRVIAHPSFFNKSYAEVVA
MLAEADQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKENDFSLG
RSLWIGTEEFEDLDEIIARHIMPMALAARELIQYKYYKPNMVTGDENERD
VMEKLLREEKANDPKKIHYFFTASRAMPGKFLLSYLPKTKVRHEYVTVMP
EGYRFRGQIFDTVNSLLRWFKEHWLDPTATPASASASNLTPLHLMRPPPT
ISSSSQTSLGPQAPYSVTGSVTGGTPRSGISSAVGGGGSSAYSITQSITG
YGTSGSSAPGAGVSSSHYGSSSTPSFGAINTPYTPSGQTPFMTPYTPHAS
QTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYHDMGGGGGGGVGGG
GGSNAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHH
HSQQQPHMGMSMNMGITMSLGRGTGGGGGGGYGSTPVNDYSTGGGHNRGM
SSKASVRSTPRTNASPHSMNLGDATPLYDENASFLDH

BO34915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spt6-PB 1831 CG12225-PB 1..1831 1..1831 9621 100 Plus
Spt6-PA 1831 CG12225-PA 1..1831 1..1831 9621 100 Plus
l(2)01289-PG 1191 CG9432-PG 722..939 3..249 180 28.1 Plus
l(2)01289-PG 1191 CG9432-PG 758..956 6..239 180 24.8 Plus
l(2)01289-PM 1193 CG9432-PM 758..956 6..239 180 24.8 Plus
l(2)01289-PM 1193 CG9432-PM 722..939 3..249 180 28.1 Plus
l(2)01289-PG 1191 CG9432-PG 768..974 6..235 177 27.6 Plus
l(2)01289-PM 1193 CG9432-PM 768..974 6..235 177 27.6 Plus