BO34920.complete Sequence
1153 bp assembled on 2013-12-04
GenBank Submission: KX799907
> BO34920.complete
GAAGTTATCAGTCGACATGCAGAAGTTCTCGATCAGCTTGCTGATCTTCA
TCGGAGCTCTGTTGGCCGCTTCAGAGGCTGGCATCTCATCGCCCATCATA
GGGGTTCTCACACAGGAAGTTTACGTCGATGGTTTGATCTCGAGACATTT
TGATAACAAGACCAGCTATATTGCCGCCTCGTATGTGAAGTATCTCGAAG
GAGCTGGAGCCCGAGTAGTGCCGATTTGGATCGGTCGCAATCGCAGCTAC
TACGACGATCTCATGCGCAAGATAAATGGAGTCTTGTTGCCCGGTGGAGC
CACTTGGTTTAATCAGAGTAATGGGTATGCGGATGCGGGCGAACACCTCA
TCCACTTGGCCATTGAACTAAATGATCAGGGCGTCTTTATGCCGGTGTGG
GGCACTTGTCTGGGCATGGAACTATTGGTTTACAAGCTGGCCAACGAAAC
GGAACACCGCATTAATTGCGAAGCGACCGGCATGGCCGTGCCTATGGAGT
TTAAAGAAGACTATAAGAAGAGCCGCCTGTTTGCATCCATCACCGATGAT
GTGGTGGACACCATGGTCAAAGAGAATGTGACCTATCACTGGCATCAGTT
CTGCTATACGGAAAAAGACTTCGAGCGGGATCTACTAAACGAAACTTGGC
GGGTTATGTCCCTAAATCATGACTGGAATGGCGTTGAGTTTATTTCCACC
GTAGAGCACATAAAGTACCCCTTCTATGGAGTACAATTCCATCCGGAGAA
ACCGCTGTACGAGTTTACAAAGACAAGCATTCCCCATACCGCAGCTGCTG
TGTTAAGTGGTCAATTCTTCGCCGATTTCTTTGTGAGTGAGGCGAGGGAG
AGTAATCAGAGCTTTTCGAATGCCACGGAGCAGGCCAGGACGCTCATCTA
CAATTATAAGCCGGAGTATACTTCGATTCTGGGCTCCTCGTACATACAGC
AATACCTATTTACCAATGTTGAAATGGAAATACCCGAAATTCCGGAGATC
CCTGATGAGGGCGGCAATAACGATGGGGGTAGTAGTGGCGGCTACATTCC
CATTGTTGTACCAGGCGGTGACGGTTCTACCACTATGCCTTTACTAAGTG
GATTGCTCCTGACTCTGGTTCTCTTATCAATTAATGCAAGCTTTCTAGAC
CAT
BO34920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dp-RA | 1122 | CG32155-PA | 1..1119 | 17..1135 | 5580 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dp-RA | 2517 | CG32155-RA | 638..1756 | 17..1135 | 5580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16235611..16236238 | 508..1135 | 3140 | 100 | Plus |
| 3L | 28110227 | 3L | 16235318..16235552 | 275..509 | 1160 | 99.6 | Plus |
| 3L | 28110227 | 3L | 16234777..16234989 | 17..229 | 1050 | 99.5 | Plus |
| 3L | 28110227 | 3L | 16235211..16235262 | 228..279 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:36:32 has no hits.
BO34920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:58:51 Download gff for
BO34920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dp-RA | 638..1756 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:14 Download gff for
BO34920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dp-RA | 638..1756 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:14 Download gff for
BO34920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16234777..16234988 | 17..228 | 99 | -> | Plus |
| 3L | 16235212..16235262 | 229..279 | 100 | -> | Plus |
| 3L | 16235323..16235552 | 280..509 | 100 | -> | Plus |
| 3L | 16235613..16236238 | 510..1137 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:58:51 Download gff for
BO34920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16227877..16228088 | 17..228 | 99 | -> | Plus |
| arm_3L | 16228312..16228362 | 229..279 | 100 | -> | Plus |
| arm_3L | 16228423..16228652 | 280..509 | 100 | -> | Plus |
| arm_3L | 16228713..16229338 | 510..1137 | 99 | | Plus |
BO34920.pep Sequence
Translation from 16 to 1153
> BO34920.pep
MQKFSISLLIFIGALLAASEAGISSPIIGVLTQEVYVDGLISRHFDNKTS
YIAASYVKYLEGAGARVVPIWIGRNRSYYDDLMRKINGVLLPGGATWFNQ
SNGYADAGEHLIHLAIELNDQGVFMPVWGTCLGMELLVYKLANETEHRIN
CEATGMAVPMEFKEDYKKSRLFASITDDVVDTMVKENVTYHWHQFCYTEK
DFERDLLNETWRVMSLNHDWNGVEFISTVEHIKYPFYGVQFHPEKPLYEF
TKTSIPHTAAAVLSGQFFADFFVSEARESNQSFSNATEQARTLIYNYKPE
YTSILGSSYIQQYLFTNVEMEIPEIPEIPDEGGNNDGGSSGGYIPIVVPG
GDGSTTMPLLSGLLLTLVLLSINASFLDH
BO34920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dp-PA | 373 | CG32155-PA | 1..373 | 1..373 | 1963 | 100 | Plus |
| l(3)72Dr-PA | 345 | CG32154-PA | 16..341 | 26..331 | 516 | 34.7 | Plus |
