BO34923.complete Sequence
898 bp assembled on 2013-12-04
GenBank Submission: KX796792
> BO34923.complete
GAAGTTATCAGTCGACATGGTTCGACTGGGTGTTGTGCAGATCCTGGTGA
TCCTGCTAGCTTGTACTTGCTATAAGCCCATTAGCGCCGTGCGTTTGGCG
CAGCTTAGTGAGGATCAGCTGGAGTGGATCTCGAAGGCGGAAGGAGTCAA
CTTCCAGAATCGCGTAATCAATGGCGAAGATGTGCAGTTGGGCGAGGCCA
AGTACCAGATATCGTTGCAGGGAATGTACGGAGGTCACATATGTGGCGGA
TGCATCATCGACGAACGCCATGTCCTGACGGCAGCCCACTGCGTATATGG
CTATAACCCCACCTATCTGCGAGTGATCACAGGAACTGTGGAGTACGAAA
AGCCGGATGCCGTGTATTTCGTGGAGGAGCATTGGATTCACTGCAACTAC
AACAGTCCCGACTACCACAATGATATTGCCTTGATTCGGCTAAACGATAC
GATCAAGTTCAATGAGTACACTCAACCGGCTGAGCTGCCCACAGCTCCGG
TGGCAAATGGGACGCAGTTGCTCCTCACGGGCTGGGGCTCAACGGAACTT
TGGGGCGATACGCCCGATATACTGCAAAAGGCTTATCTCACGCATGTCGT
GTACTCGACTTGCCAGGAGATAATGAACAACGATCCGTCGAACGGTCCAT
GTCATATCTGCACACTGACGACTGGTGGACAAGGAGCCTGCCATGGCGAT
TCCGGCGGTCCGCTGACGCACAACGGAGTACTCTACGGTCTGGTCAATTG
GGGTTATCCCTGTGCACTTGGAGTTCCCGATAGTCACGCCAACGTGTACT
ATTATCTGGAATGGATCAGAAGCATGATCTCGGGACCATGTAGCAACTGT
CACTGCTATGCCAGTAACTATCCCAGCCTGGCAAGCTTTCTAGACCAT
BO34923.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17475-RB | 867 | CG17475-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG17475-RA | 867 | CG17475-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17475-RB | 1088 | CG17475-RB | 44..907 | 17..880 | 4320 | 100 | Plus |
| CG17475-RA | 1012 | CG17475-RA | 44..907 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17129520..17130383 | 880..17 | 4320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:36:28 has no hits.
BO34923.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:58:49 Download gff for
BO34923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17475-RA | 44..907 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:12 Download gff for
BO34923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17475-RA | 44..907 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:12 Download gff for
BO34923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17129517..17130383 | 17..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:58:49 Download gff for
BO34923.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12955239..12956105 | 17..882 | 99 | | Minus |
BO34923.pep Sequence
Translation from 16 to 898
> BO34923.pep
MVRLGVVQILVILLACTCYKPISAVRLAQLSEDQLEWISKAEGVNFQNRV
INGEDVQLGEAKYQISLQGMYGGHICGGCIIDERHVLTAAHCVYGYNPTY
LRVITGTVEYEKPDAVYFVEEHWIHCNYNSPDYHNDIALIRLNDTIKFNE
YTQPAELPTAPVANGTQLLLTGWGSTELWGDTPDILQKAYLTHVVYSTCQ
EIMNNDPSNGPCHICTLTTGGQGACHGDSGGPLTHNGVLYGLVNWGYPCA
LGVPDSHANVYYYLEWIRSMISGPCSNCHCYASNYPSLASFLDH
BO34923.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17475-PB | 288 | CG17475-PB | 1..288 | 1..288 | 1599 | 100 | Plus |
| CG17475-PA | 288 | CG17475-PA | 1..288 | 1..288 | 1599 | 100 | Plus |
| CG31269-PB | 273 | CG31269-PB | 5..271 | 9..284 | 673 | 48.2 | Plus |
| CG31265-PA | 266 | CG31265-PA | 36..265 | 49..281 | 630 | 49.8 | Plus |
| CG17477-PA | 267 | CG17477-PA | 27..253 | 50..273 | 602 | 47.1 | Plus |
