BO34927.complete Sequence
1132 bp assembled on 2014-03-03
GenBank Submission: KX797776
> BO34927.complete
GAAGTTATCAGTCGACATGAAAGTGATGCAACGCGTGCTCTTTGTCGGTT
GCCTCATAGTAGGCGTGGGTATGGTGAGATCACAGGACTACCAAGACTAC
CAGGAGAACACACCAAGGACTGCTCCTCTCCGACTGCGAGCTAATGCCGC
TCCTGCTCGAGCTGAAGCGCCGCGGGCTGATCCAGTGGCAATCCTCAAGC
AGATCAACAAGCACAACGAAGATGGCTCTTACACTTATGGCTATGAGGGA
GCTGATGGATCCTTCAAAATCGAGACCAAGCTGGCCACTGGCGAAGTGAA
GGGCAAGTACGGATATGTGGATGAGACCGGAAAAGTTCGAGTAGTTGAGT
ACGGAGCCAACAAGTATGGCTTCCAGCCATCTGGAGAAGGTATCACCGTG
GCACCACCCACACTGGTGGATGAAACTCTCAAGGAGGAACCGGATTACGC
AGATGAGCCGGCACCACAGCGCCCGCAGAAACCCTATCGTGTTCAACGTC
CCCAGCCACGCCCTCAGCCTCGCCCACAACCTCAACCCCAGCCACAGTAT
GTGCAATACGAGGTGGAAGAGGAGTCACCACGTCGAGTTCAGTATGCCCC
AGCTCCTCAGCCGCAGCCTCAACCACTGCCGCAGCCACAACATCTGCCAC
AACAGCACCACCAACCATCGGTGGGTCCGGCACCGCCAAGACTCCAGGTT
CCTGGTGCTCAGCGAACCACCGACGTACTCTACTCACCACTGCAGCGTCC
CGCTCGCCCGGAACCGGATTACTCGCAAACGCAGAGCTTCGGCGATGGTC
CCTCGAATGTGCGGATTTCCCGACCCGTTTACGCCCTGCCCCCCGCCTCA
CCAGCTCCGAGCAGTGCCCGGGCTCAGGGATTCCTGGCTCCCGCCTCCGG
TGGACGTCCGCTGCTGGAACCCGTGGGCTTTGGCCAATCCCAGGGACCCA
GCGCTCGTCCTGTCCAGCAGCAGCCGAGCTTCCAGCCACAACCGCGGCCA
CAGGCTCGTAGTGGTGGAGGCGGTGGCTCCGGATTGCTCGATCAGTTAGC
TCGGGACTACGCCCTGCCCCAGGGAAATGCCCAGCCGCTGCACGACATCA
CCTTCGGCTACTACGCAAGCTTTCTAGACCAT
BO34927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr97Ea-RA | 1101 | CG6131-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
| Cpr97Ea-RB | 1092 | CG6131-PB | 1..1089 | 26..1114 | 5445 | 100 | Plus |
| Cpr97Eb-RA | 708 | CG15884-PA | 94..272 | 194..372 | 235 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr97Ea-RA | 1514 | CG6131-RA | 269..1368 | 15..1114 | 5500 | 100 | Plus |
| Cpr97Ea-RB | 1502 | CG6131-RB | 266..1356 | 24..1114 | 5455 | 100 | Plus |
| Cpr97Eb-RA | 1054 | CG15884-RA | 233..411 | 194..372 | 235 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27083276..27083902 | 1114..488 | 3135 | 100 | Minus |
| 3R | 32079331 | 3R | 27083966..27084242 | 487..211 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 27084298..27084484 | 211..25 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 27090347..27090525 | 372..194 | 235 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:59:34 has no hits.
BO34927.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:07 Download gff for
BO34927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr97Ea-RA | 271..1368 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:43 Download gff for
BO34927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr97Ea-RA | 271..1368 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:43 Download gff for
BO34927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27083273..27083902 | 488..1116 | 99 | <- | Minus |
| 3R | 27083966..27084242 | 211..487 | 100 | <- | Minus |
| 3R | 27084299..27084484 | 25..210 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:07 Download gff for
BO34927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22908995..22909624 | 488..1116 | 99 | <- | Minus |
| arm_3R | 22909688..22909964 | 211..487 | 100 | <- | Minus |
| arm_3R | 22910021..22910206 | 25..210 | 100 | | Minus |
BO34927.pep Sequence
Translation from 16 to 1132
> BO34927.pep
MKVMQRVLFVGCLIVGVGMVRSQDYQDYQENTPRTAPLRLRANAAPARAE
APRADPVAILKQINKHNEDGSYTYGYEGADGSFKIETKLATGEVKGKYGY
VDETGKVRVVEYGANKYGFQPSGEGITVAPPTLVDETLKEEPDYADEPAP
QRPQKPYRVQRPQPRPQPRPQPQPQPQYVQYEVEEESPRRVQYAPAPQPQ
PQPLPQPQHLPQQHHQPSVGPAPPRLQVPGAQRTTDVLYSPLQRPARPEP
DYSQTQSFGDGPSNVRISRPVYALPPASPAPSSARAQGFLAPASGGRPLL
EPVGFGQSQGPSARPVQQQPSFQPQPRPQARSGGGGGSGLLDQLARDYAL
PQGNAQPLHDITFGYYASFLDH
BO34927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr97Ea-PA | 366 | CG6131-PA | 1..366 | 1..366 | 1958 | 100 | Plus |
| Cpr97Ea-PB | 363 | CG6131-PB | 1..363 | 4..366 | 1944 | 100 | Plus |
| Cpr97Eb-PA | 235 | CG15884-PA | 11..214 | 38..215 | 352 | 43.9 | Plus |
| Cpr100A-PA | 241 | CG12045-PA | 5..206 | 38..233 | 214 | 32.1 | Plus |
| CG15021-PA | 420 | CG15021-PA | 139..363 | 129..326 | 181 | 31 | Plus |
