Clone BO34928 Report

Search the DGRC for BO34928

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptAlg10-RA
Protein status:BO34928.pep: Imported from assembly
Sequenced Size:1381

Clone Sequence Records

BO34928.complete Sequence

1381 bp assembled on 2014-03-03

GenBank Submission: KX795978

> BO34928.complete
GAAGTTATCAGTCGACATGAATGGGTCCTGGAAACTAATCCTGCCCGTGG
GCTTTGTGCTGTACTCGCTGCCACTTTTCCTGCGGGTGAATGGCACATCG
GACTATGTAATCGACGAGGAGTTCCACATTCCGCAGGGATTGGCCTTTTG
CCGCAAGGAATTCGATGTGTGGGATCCCAAGATAACAACATTTCCGGGCC
TCTATCTGATCGCCCTGCTCCTGAATCCCCTAAGTCTGTGCACGGTGACG
GGCCTGAGGATGCTCAGCCTAGCAGGTGCCGGCATCAATATTCTGCTGCT
CTACAAGATCAGACGGCGCATCCTGGCCGGCTCGGGTGGCAACTCATATG
CCGCCCATGAGGCTATCACCATGTCCGTGCTTCCGCCGCTCTACTTCTTT
AGCCACCTTTACTACACGGACACCTTGTCGCTGACCATGGTGCTTCTGTT
CTACAACTATTGGCAGCAGGAGGCGCACCTGCCGGCGGCGGTCTTTGGGG
CTGCCAGTGTGCTTATGCGCCAGACGAATATCGTGTGGGTATGCATGGCC
ACCGGAATGACTGTGCTGGACACGTTGGTCAATCAATGCGCCCGCACTGG
GCGCGTTCCCAAGGAAAATGTTCGACTGATGGGCAAAGAGTTGTGGCTTC
AACTCGTTAGCAGCCCCCAATTGCTGTGCAATTGCATCCTGAGCATCTTG
GCCAAGTGCTGTTTCTACGCTTCGATCATTCTGCCGTTCGTGGGATTCCT
CTTCATCAATGGTTCCATTGTGGTGGGCGACAAGAGTGCCCACGAGGCCA
GTTTGCATGTGCCGCAGCTATTCTACTTCGCCATCTTTGCGGCTGGCTTT
GGGATATCCAACACCATACGTCAGTTTCGTCCGGCAGCAGAATTAATACG
CAGGAATCGCGTGCTGTCCCTATTGGCATTGCTGCTCATACTGGTGGTGG
TGCACCTAAACACCGAAGTGCATCCCTACCTGCTGGCTGACAACAGACAC
TATACATTCTATATATGGAGCCGACTTTATGGACGGTTCTGGTGGTTCCG
CTACGCCATGGCGCCCGCTTATCTGCTCTCGATTTGCGTACTCTTTTGCG
GACTACGTCACATGCCGGAAAGCTTTAAGTTAATGTTTCCACTTAGTCTA
TTCCTGGTGCTGTGCTTCCAGCGACTCCTGGAGCTGCGCTACTTCCTGGT
GCCGTACATTCTGTTTCGACTCAACACACGGCACACTCGCAAGGGTTACG
CCGAGTGGCTGGAGCTCGGAGCTCATCTGCTGCTCAATGTGGCCACGTTT
TACGTGTACTTTACAAAGGAGTTCTACTGGAAAAACTACCGCACTCCTCA
AAGGATCATATGGGCAAGCTTTCTAGACCAT

BO34928.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Alg10-RA 1350 CG32076-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Alg10-RA 1529 CG32076-RA 105..1452 16..1363 6740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11165819..11166543 639..1363 3625 100 Plus
3L 28110227 3L 11165285..11165763 169..647 2365 99.6 Plus
3L 28110227 3L 11165075..11165228 16..169 770 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:59:37 has no hits.

BO34928.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:08 Download gff for BO34928.complete
Subject Subject Range Query Range Percent Splice Strand
Alg10-RA 106..1452 17..1365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:44 Download gff for BO34928.complete
Subject Subject Range Query Range Percent Splice Strand
Alg10-RA 106..1452 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:44 Download gff for BO34928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11165076..11165228 17..169 100 -> Plus
3L 11165286..11165756 170..640 100 -> Plus
3L 11165821..11166543 641..1365 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:08 Download gff for BO34928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11158176..11158328 17..169 100 -> Plus
arm_3L 11158386..11158856 170..640 100 -> Plus
arm_3L 11158921..11159643 641..1365 99   Plus

BO34928.pep Sequence

Translation from 16 to 1381

> BO34928.pep
MNGSWKLILPVGFVLYSLPLFLRVNGTSDYVIDEEFHIPQGLAFCRKEFD
VWDPKITTFPGLYLIALLLNPLSLCTVTGLRMLSLAGAGINILLLYKIRR
RILAGSGGNSYAAHEAITMSVLPPLYFFSHLYYTDTLSLTMVLLFYNYWQ
QEAHLPAAVFGAASVLMRQTNIVWVCMATGMTVLDTLVNQCARTGRVPKE
NVRLMGKELWLQLVSSPQLLCNCILSILAKCCFYASIILPFVGFLFINGS
IVVGDKSAHEASLHVPQLFYFAIFAAGFGISNTIRQFRPAAELIRRNRVL
SLLALLLILVVVHLNTEVHPYLLADNRHYTFYIWSRLYGRFWWFRYAMAP
AYLLSICVLFCGLRHMPESFKLMFPLSLFLVLCFQRLLELRYFLVPYILF
RLNTRHTRKGYAEWLELGAHLLLNVATFYVYFTKEFYWKNYRTPQRIIWA
SFLDH

BO34928.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Alg10-PA 449 CG32076-PA 1..449 1..449 2373 100 Plus