BO34931.complete Sequence
1024 bp assembled on 2013-12-04
GenBank Submission: KX796544
> BO34931.complete
GAAGTTATCAGTCGACATGTCCTATTGGCGTTTGTTGTGGCTGGCGCTCA
AAATGATTTACCAGCTGCTGTGCTGCTCCGTGAGTCTGATCTTCTTCTGC
TTCAACGTATTCTGGCTCTTTTGCAACCTGGCCATCCCGTGGTGCACTCT
TACCTTGCTCGTTGTGTGCATCGCCTCCAAGTTCGTCAAACTGCAACGAA
GTCCCAACGAGAAGCGACTCCTAAGCCTTCTGAGTTCTCCAGAGGAATGG
CCCAGTTACTGGCCAATCGCCAACCGGGCAGCCGGCTTTGATGCGCCCGA
AAACTCCAAGGCAGCCATTAAGAAGTGCCTCGCACGTGGATATCGGAACG
TGCTTCTGGATGCCGGCCTCACGTCCTGTGGTGAAATAGTCGTGGCTAAC
CCCACAAAAATAAACGTTGCACAGCCGCTTGTGGAGTTGCAAAAGCTAAA
CATCACGGAGCAACACCCGATGGGGTCGCAGTACGAAGCGGAAACGGTGG
CTCCCCTCAGGCAATTGTCCGATTTCCTGGAGGCAGAGGCTGCTGAGACC
ACAGTGTTTTTGCGTCTGCACGACAACAGCGCCAGGATGATAAACGAACT
GCAGAAGTTTATGACTGCTGACGAGTCGTTCACCCAGCGCACAATTGTCA
TCAGTCGATCACCACTAGCGATTTACCAGCTCCGAAAACTTAAGCCCGAA
ATAATTTGTGGCCTTTGGCACGAGACCTATTTGTCACTGGCCATCCTCAA
GTCTTCTACACTTATTACCTCAATCTATGGCGCTATTTTTCGCAACATAA
TTGCACCCGTGATAGGAATAAGCGTAGTTTTTCTCAGCAAAGATGAGATT
AACTTCCACATTGCCGATCTTTGGCGCAACGTGGGTGTCCGTCCAATAGT
CTATATGGTTAACTCACCCAACGAGAAAAGATACTTCCAAAAGACCATGA
AGATCCAGTACCTTACAGACTCGTTGCGGTCAGAGCCGCACCTACTTATG
AAAGCCGCAAGCTTTCTAGACCAT
BO34931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14883-RA | 993 | CG14883-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14883-RA | 1838 | CG14883-RA | 276..1265 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16456411..16456719 | 17..325 | 1545 | 100 | Plus |
| 3R | 32079331 | 3R | 16457001..16457206 | 474..679 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 16457264..16457442 | 677..855 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 16456794..16456946 | 324..476 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 16457510..16457660 | 856..1006 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:36:15 has no hits.
BO34931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:58:42 Download gff for
BO34931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14883-RA | 276..1265 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:05 Download gff for
BO34931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14883-RA | 276..1265 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:05 Download gff for
BO34931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16456411..16456719 | 17..325 | 100 | -> | Plus |
| 3R | 16456796..16456944 | 326..474 | 100 | -> | Plus |
| 3R | 16457002..16457206 | 475..679 | 100 | -> | Plus |
| 3R | 16457267..16457442 | 680..855 | 100 | -> | Plus |
| 3R | 16457510..16457660 | 856..1008 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:58:42 Download gff for
BO34931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12282989..12283164 | 680..855 | 100 | -> | Plus |
| arm_3R | 12283232..12283382 | 856..1008 | 98 | | Plus |
| arm_3R | 12282133..12282441 | 17..325 | 100 | -> | Plus |
| arm_3R | 12282518..12282666 | 326..474 | 100 | -> | Plus |
| arm_3R | 12282724..12282928 | 475..679 | 100 | -> | Plus |
BO34931.pep Sequence
Translation from 16 to 1024
> BO34931.pep
MSYWRLLWLALKMIYQLLCCSVSLIFFCFNVFWLFCNLAIPWCTLTLLVV
CIASKFVKLQRSPNEKRLLSLLSSPEEWPSYWPIANRAAGFDAPENSKAA
IKKCLARGYRNVLLDAGLTSCGEIVVANPTKINVAQPLVELQKLNITEQH
PMGSQYEAETVAPLRQLSDFLEAEAAETTVFLRLHDNSARMINELQKFMT
ADESFTQRTIVISRSPLAIYQLRKLKPEIICGLWHETYLSLAILKSSTLI
TSIYGAIFRNIIAPVIGISVVFLSKDEINFHIADLWRNVGVRPIVYMVNS
PNEKRYFQKTMKIQYLTDSLRSEPHLLMKAASFLDH
BO34931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14883-PA | 330 | CG14883-PA | 1..330 | 1..330 | 1708 | 100 | Plus |
