BO34932.complete Sequence
1177 bp assembled on 2013-12-04
GenBank Submission: KX794636
> BO34932.complete
GAAGTTATCAGTCGACATGGAGCGCAGTCATTTGCCGGAGACGCCATTCG
ACCTGGCCCATTCTGGGCCCAGGTTTCAGGCCCAGTCGAGTGGCAATGGT
TCCGTGCTGGACAATGTGCTGCCCGACATGGCGCACCTGGTGAACCCCTA
CTGGAGCCGCTTTGCGCCCATGGATCCCATGATGAGCAAAATTCTGGGAT
TGTTCACCCTGGCCATTATGATCATCTCGTGCTGCGGCAACGGAGTGGTG
GTCTACATTTTCGGTGGAACAAAGTCGCTGCGCACGCCGGCAAATTTGCT
CGTTCTCAACCTGGCCTTCTCCGACTTCTGTATGATGGCCTCCCAGTCGC
CGGTGATGATTATTAACTTCTACTACGAGACTTGGGTGCTGGGTCCGCTG
TGGTGCGACATCTACGCGGGATGTGGCTCGCTCTTTGGCTGTGTGTCCAT
CTGGTCCATGTGCATGATTGCCTTCGATCGGTACAATGTGATAGTGAAGG
GTATCAATGGCACACCCATGACCATCAAGACGTCTATAATGAAGATACTT
TTCATCTGGATGATGGCTGTCTTTTGGACTGTCATGCCATTGATTGGATG
GAGCGCCTATGTGCCCGAGGGCAATCTGACTGCCTGCAGCATTGACTATA
TGACGCGTATGTGGAACCCGCGATCTTATTTAATCACCTACTCCCTCTTC
GTTTACTACACTCCACTGTTTCTCATCTGCTACTCCTACTGGTTCATCAT
TGCCGCCGTGGCAGCACATGAAAAAGCGATGCGGGAACAGGCCAAGAAGA
TGAATGTGAAATCCCTGCGGAGCTCTGAGGATTGCGACAAAAGTGCCGAG
GGAAAACTGGCCAAGGTGGCTCTAACTACCATCTCCCTATGGTTTATGGC
ATGGACACCATACCTTGTCATTTGCTACTTCGGACTCTTCAAAATCGACG
GATTGACCCCACTGACGACCATTTGGGGAGCGACTTTCGCCAAAACGAGC
GCAGTCTACAATCCGATTGTGTACGGCATTAGCCATCCCAAGTACCGCAT
AGTTCTCAAGGAAAAGTGCCCTATGTGTGTGTTTGGCAATACGGATGAGC
CGAAACCGGATGCACCCGCTTCCGATACGGAAACTACGTCTGAGGCGGAT
TCAAAGGCTGCAAGCTTTCTAGACCAT
BO34932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-RA | 1146 | CG16740-PA | 1..1143 | 17..1159 | 5700 | 99.9 | Plus |
| ninaE-RA | 1122 | CG4550-PA | 196..1052 | 233..1089 | 820 | 73 | Plus |
| Rh6-RB | 1156 | CG5192-PB | 378..455 | 424..501 | 180 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-RA | 1365 | CG16740-RA | 55..1198 | 16..1159 | 5705 | 99.9 | Plus |
| ninaE-RA | 1588 | CG4550-RA | 372..1228 | 233..1089 | 820 | 73 | Plus |
| Rh6-RB | 1474 | CG5192-RB | 516..593 | 424..501 | 180 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18899673..18900589 | 116..1032 | 4585 | 100 | Plus |
| 3R | 32079331 | 3R | 18899477..18899579 | 16..118 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 18900758..18900852 | 1065..1159 | 460 | 98.9 | Plus |
| 3R | 32079331 | 3R | 19886743..19886993 | 1029..779 | 460 | 78.9 | Minus |
| 3R | 32079331 | 3R | 19887504..19887772 | 501..233 | 295 | 74 | Minus |
| 3R | 32079331 | 3R | 19887077..19887222 | 753..608 | 235 | 77.4 | Minus |
| 3R | 32079331 | 3R | 18900668..18900705 | 1029..1066 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:36:47 has no hits.
BO34932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:58:59 Download gff for
BO34932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh2-RA | 56..1198 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:21 Download gff for
BO34932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rh2-RA | 56..1198 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:21 Download gff for
BO34932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18899673..18900589 | 116..1032 | 100 | -> | Plus |
| 3R | 18900672..18900705 | 1033..1066 | 100 | -> | Plus |
| 3R | 18900760..18900852 | 1067..1161 | 96 | | Plus |
| 3R | 18899478..18899576 | 17..115 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:58:59 Download gff for
BO34932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14725395..14726311 | 116..1032 | 100 | -> | Plus |
| arm_3R | 14726394..14726427 | 1033..1066 | 100 | -> | Plus |
| arm_3R | 14726482..14726574 | 1067..1161 | 96 | | Plus |
| arm_3R | 14725200..14725298 | 17..115 | 100 | -> | Plus |
BO34932.pep Sequence
Translation from 16 to 1177
> BO34932.pep
MERSHLPETPFDLAHSGPRFQAQSSGNGSVLDNVLPDMAHLVNPYWSRFA
PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
FSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCM
IAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVP
EGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAA
HEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYL
VICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEK
CPMCVFGNTDEPKPDAPASDTETTSEADSKAASFLDH
BO34932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rh2-PA | 381 | CG16740-PA | 1..381 | 1..381 | 2053 | 100 | Plus |
| ninaE-PA | 373 | CG4550-PA | 9..373 | 14..381 | 1370 | 69.6 | Plus |
| Rh6-PB | 369 | CG5192-PB | 7..369 | 18..379 | 1000 | 52.2 | Plus |
| Rh4-PA | 378 | CG9668-PA | 13..378 | 19..383 | 633 | 39.4 | Plus |
| Rh3-PA | 383 | CG10888-PA | 1..383 | 1..383 | 612 | 38 | Plus |
