BO34933.complete Sequence
1060 bp assembled on 2013-12-04
GenBank Submission: KX800138
> BO34933.complete
GAAGTTATCAGTCGACATGCCGCGCAAGTTGCTTAAATTCCTTATCATCT
TCGACAACACTTCCCTCCTGTACTTCCCGGGCCAGTTTCTCTCCGGACGG
GTTCTAATCGAATTGCAGGATGAGACGCCTGCTTTGGGACTTCATTTCCA
TGTGGTAGGCGAAGGGGTCGTGCGCAACGGGCGGCGACAGGAGCGGACAT
ACGATAAGGAGAACTATATCGACTTTCGGATGCGACTTCTGGGGGACGTA
GACCAAGGAGGTCCAGCTATACTCTCGCCAGGAATTCACAGCTTCCCCTT
CAAACTCGGCTTGCCACTGGGTCTTCCATCTACATTTCTCGGTCGGTACG
GCTGGATTCAGTTCTACTGCAAGGCGGCGCTCCGCGAGAACAATGGCATT
ATCCATAAGAACCACCAGGTCTTCATTGTGATGAATCCCATCGACCTAAA
CCTTGAAAAGCCCATCTTAGCACAACCGTTCACCTGCGAAGTTGAGCACA
AGCTAGGCGTCGTCTGTGTTGGTGGAGGTCAGATAAAGTGCAGAGTGTCC
CTTGATCGCGGTGGGTATGTGCCCGGCGAGAATATTCTGGTCACCGCATT
TATATCCAACTACAGTAATGTGTCCATTAAACGGACTAAGGCATCCCTCA
CTGAGACCATCGAGTATTTGGCGCGGGGGAAGGTGGTGCAAACGGAAAAA
CGGGAGCTGGCTGTTTTAGTTCGTGGCAAGATCCGTCCGGGGGCCAAAGA
CGAGTGGCACAACGAGCTTTACGTTCCACCCCTGCCGCCGACCAATCTTC
ATGGCTGCCACCTGATCAAAATATCCTACGACGTCTTCTTCGTGATCGAA
CCCAAGTCCATGGAGAAGGAGATTAAGCTACAGCTTCCTATCGTGCTTGC
GACGTACCCCTTTCGACACTCCGGTGATGCGGTCAATGCCAACACCTGGC
CGGAATCGGTGCTTAAGCCGGACACGCACACCCACTATCCGTCCACACTA
CCCATATTCCGGCCCTGGCTGCACGAGAAGCCTATCGAGGCAGCAAGCTT
TCTAGACCAT
BO34933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vdup1-RE | 1029 | CG7047-PE | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Vdup1-RD | 1029 | CG7047-PD | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Vdup1-RA | 1029 | CG7047-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vdup1-RE | 1384 | CG7047-RE | 168..1193 | 17..1042 | 5130 | 100 | Plus |
Vdup1-RD | 2020 | CG7047-RD | 608..1633 | 17..1042 | 5130 | 100 | Plus |
Vdup1-RA | 1676 | CG7047-RA | 460..1485 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 177382..177837 | 472..17 | 2280 | 100 | Minus |
3L | 28110227 | 3L | 176693..177081 | 1042..654 | 1945 | 100 | Minus |
3L | 28110227 | 3L | 177146..177328 | 655..473 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:36:52 has no hits.
BO34933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:01 Download gff for
BO34933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vdup1-RA | 460..1485 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:22 Download gff for
BO34933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vdup1-RA | 460..1485 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:22 Download gff for
BO34933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 176689..177079 | 656..1044 | 99 | <- | Minus |
3L | 177146..177328 | 473..655 | 100 | <- | Minus |
3L | 177382..177837 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:01 Download gff for
BO34933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 176689..177079 | 656..1044 | 99 | <- | Minus |
arm_3L | 177146..177328 | 473..655 | 100 | <- | Minus |
arm_3L | 177382..177837 | 17..472 | 100 | | Minus |
BO34933.pep Sequence
Translation from 16 to 1060
> BO34933.pep
MPRKLLKFLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEG
VVRNGRRQERTYDKENYIDFRMRLLGDVDQGGPAILSPGIHSFPFKLGLP
LGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQVFIVMNPIDLNLEKPI
LAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYS
NVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE
LYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFR
HSGDAVNANTWPESVLKPDTHTHYPSTLPIFRPWLHEKPIEAASFLDH
BO34933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vdup1-PE | 342 | CG7047-PE | 1..342 | 1..342 | 1821 | 100 | Plus |
Vdup1-PD | 342 | CG7047-PD | 1..342 | 1..342 | 1821 | 100 | Plus |
Vdup1-PA | 342 | CG7047-PA | 1..342 | 1..342 | 1821 | 100 | Plus |
Vdup1-PC | 342 | CG7047-PC | 1..342 | 1..342 | 1821 | 100 | Plus |
Vdup1-PB | 342 | CG7047-PB | 1..342 | 1..342 | 1821 | 100 | Plus |