Clone BO34933 Report

Search the DGRC for BO34933

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptVdup1-RA
Protein status:BO34933.pep: Imported from assembly
Sequenced Size:1060

Clone Sequence Records

BO34933.complete Sequence

1060 bp assembled on 2013-12-04

GenBank Submission: KX800138

> BO34933.complete
GAAGTTATCAGTCGACATGCCGCGCAAGTTGCTTAAATTCCTTATCATCT
TCGACAACACTTCCCTCCTGTACTTCCCGGGCCAGTTTCTCTCCGGACGG
GTTCTAATCGAATTGCAGGATGAGACGCCTGCTTTGGGACTTCATTTCCA
TGTGGTAGGCGAAGGGGTCGTGCGCAACGGGCGGCGACAGGAGCGGACAT
ACGATAAGGAGAACTATATCGACTTTCGGATGCGACTTCTGGGGGACGTA
GACCAAGGAGGTCCAGCTATACTCTCGCCAGGAATTCACAGCTTCCCCTT
CAAACTCGGCTTGCCACTGGGTCTTCCATCTACATTTCTCGGTCGGTACG
GCTGGATTCAGTTCTACTGCAAGGCGGCGCTCCGCGAGAACAATGGCATT
ATCCATAAGAACCACCAGGTCTTCATTGTGATGAATCCCATCGACCTAAA
CCTTGAAAAGCCCATCTTAGCACAACCGTTCACCTGCGAAGTTGAGCACA
AGCTAGGCGTCGTCTGTGTTGGTGGAGGTCAGATAAAGTGCAGAGTGTCC
CTTGATCGCGGTGGGTATGTGCCCGGCGAGAATATTCTGGTCACCGCATT
TATATCCAACTACAGTAATGTGTCCATTAAACGGACTAAGGCATCCCTCA
CTGAGACCATCGAGTATTTGGCGCGGGGGAAGGTGGTGCAAACGGAAAAA
CGGGAGCTGGCTGTTTTAGTTCGTGGCAAGATCCGTCCGGGGGCCAAAGA
CGAGTGGCACAACGAGCTTTACGTTCCACCCCTGCCGCCGACCAATCTTC
ATGGCTGCCACCTGATCAAAATATCCTACGACGTCTTCTTCGTGATCGAA
CCCAAGTCCATGGAGAAGGAGATTAAGCTACAGCTTCCTATCGTGCTTGC
GACGTACCCCTTTCGACACTCCGGTGATGCGGTCAATGCCAACACCTGGC
CGGAATCGGTGCTTAAGCCGGACACGCACACCCACTATCCGTCCACACTA
CCCATATTCCGGCCCTGGCTGCACGAGAAGCCTATCGAGGCAGCAAGCTT
TCTAGACCAT

BO34933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Vdup1-RE 1029 CG7047-PE 1..1026 17..1042 5130 100 Plus
Vdup1-RD 1029 CG7047-PD 1..1026 17..1042 5130 100 Plus
Vdup1-RA 1029 CG7047-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Vdup1-RE 1384 CG7047-RE 168..1193 17..1042 5130 100 Plus
Vdup1-RD 2020 CG7047-RD 608..1633 17..1042 5130 100 Plus
Vdup1-RA 1676 CG7047-RA 460..1485 17..1042 5130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 177382..177837 472..17 2280 100 Minus
3L 28110227 3L 176693..177081 1042..654 1945 100 Minus
3L 28110227 3L 177146..177328 655..473 915 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:36:52 has no hits.

BO34933.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:01 Download gff for BO34933.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RA 460..1485 17..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:22 Download gff for BO34933.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RA 460..1485 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:22 Download gff for BO34933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 176689..177079 656..1044 99 <- Minus
3L 177146..177328 473..655 100 <- Minus
3L 177382..177837 17..472 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:01 Download gff for BO34933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 176689..177079 656..1044 99 <- Minus
arm_3L 177146..177328 473..655 100 <- Minus
arm_3L 177382..177837 17..472 100   Minus

BO34933.pep Sequence

Translation from 16 to 1060

> BO34933.pep
MPRKLLKFLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEG
VVRNGRRQERTYDKENYIDFRMRLLGDVDQGGPAILSPGIHSFPFKLGLP
LGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQVFIVMNPIDLNLEKPI
LAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYS
NVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE
LYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFR
HSGDAVNANTWPESVLKPDTHTHYPSTLPIFRPWLHEKPIEAASFLDH

BO34933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Vdup1-PE 342 CG7047-PE 1..342 1..342 1821 100 Plus
Vdup1-PD 342 CG7047-PD 1..342 1..342 1821 100 Plus
Vdup1-PA 342 CG7047-PA 1..342 1..342 1821 100 Plus
Vdup1-PC 342 CG7047-PC 1..342 1..342 1821 100 Plus
Vdup1-PB 342 CG7047-PB 1..342 1..342 1821 100 Plus