BO34934.complete Sequence
1363 bp assembled on 2013-12-04
GenBank Submission: KX793895
> BO34934.complete
GAAGTTATCAGTCGACATGACCTACGACGAGCGCAGTAGTGATGGCAGCA
GCTCTAGCGAAACACATGATTCCTTCGCCCACCTGCTGGCAACCAAGCAG
GGCCAATCCCAGACACCGGCCACAGCGATGCCCAAACACATTCCCTTCCC
GGAGCACGCCACCACATCCGAGTGGCTCAGCGAACTCATCATGTGCGCCT
TTACCATGGGTTCGGCCATCGTACAGTTCATCAACATCTATAGAACCAAC
TGGTGGCTGCCACAGGCGCACACCAGGCATATGGTGAACATCGAGCTGAT
CGATCCTTATCTTCGCTATCTACTGCTCATACTCAATACGCGGAGACTGA
TTTACTGCTTGCTGCTGGTGAAGATCAGGAAAAGAAACGAGAAGAGCCGG
CATCTTATCCGACTGGGAATCAAGTACGGATTTGGAGGCCTTGTTCAGCT
ATCCTTGGGTTTCTGCGCCATGAAGCTATACCAGAAGCACACATACATAC
TCCTTCTCTTCTTATTCTATCCTGTGGTCATCTACCTGTTGATCTTCGGC
TTCCAGCTTGAACCCTTCCTGCGCACACGATTCGAACTGCCGGGCGTGTA
TATCAACGACCTACCGGTCCATAGTTGCACCACCAATCCGGTTAACATAA
GGGACGAAGTGGAAACACTCCGACATGACTTCAATAAGCGATTCAAGCAG
CTTATCTTCACCTCCATGCTGAATGCTTACTACACTGGCCTGGTGCCCTG
CTGTCTGGCCGTCAGTGTCCAATACAATGTACTCCGAGCAGCCCAGCACT
GTATCATTGTGTGCCTGGGCGCTTTCAGTCTGTGTGCTGTTTTTCTATAT
CCTGCCAAGTATAGTGATACATTACATCGGGCTACTTTACATTTGGGCTG
CTGGCAGCGCATTGACCGGGAGCCAGCGCCTTCGCAGCTAATAGTAGCCG
CCAGTGCGCTCACCTGGTCGAAATACTCCTCCTACAACCACGGCACCGTG
GTAAAGCACAACGGAGGCCTGTACAGAAGTCATGGCATGGTTACTGTGGC
CACTCCGGGAAACGCCAGTCACGCTCGATTTTATAAACTATTTCACAATC
CCACCATAATTTATTCCACATTGGCCATCCTTCAGGCTGCCGTGCTACTA
GTAGAAATAGGGTCTCTAAGCGCAGAAAGCGTCGAGTGGCACTTTGTCCT
CTCCATCAGCTTCGTCGCCTTCACCAGCATGGGAGCCTTCTTCAAGCTGG
TGCGAGACTACCTCATCACTAAAGATCTTTACAAGGCGGAGCACGCCGTA
GCGCCCGATCAACCCTTCCGACAACGCATGAGAGATGCATTTATGGCAAG
CTTTCTAGACCAT
BO34934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13016-RA | 1332 | CG13016-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13016-RA | 1475 | CG13016-RA | 101..1434 | 12..1345 | 6655 | 99.9 | Plus |
| CG8257-RB | 2108 | CG8257-RB | 1811..2071 | 1345..1085 | 1305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14158495..14159056 | 523..1084 | 2810 | 100 | Plus |
| 2R | 25286936 | 2R | 14157862..14158136 | 12..286 | 1360 | 99.6 | Plus |
| 2R | 25286936 | 2R | 14159133..14159393 | 1085..1345 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 14158204..14158440 | 286..522 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:36:39 has no hits.
BO34934.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:58:55 Download gff for
BO34934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13016-RA | 106..1434 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:18 Download gff for
BO34934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13016-RA | 106..1434 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:18 Download gff for
BO34934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14157867..14158136 | 17..286 | 100 | -> | Plus |
| 2R | 14158205..14158440 | 287..522 | 100 | -> | Plus |
| 2R | 14158495..14159056 | 523..1084 | 100 | -> | Plus |
| 2R | 14159133..14159393 | 1085..1347 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:58:55 Download gff for
BO34934.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10045372..10045641 | 17..286 | 100 | -> | Plus |
| arm_2R | 10045710..10045945 | 287..522 | 100 | -> | Plus |
| arm_2R | 10046000..10046561 | 523..1084 | 100 | -> | Plus |
| arm_2R | 10046638..10046898 | 1085..1347 | 99 | | Plus |
BO34934.pep Sequence
Translation from 16 to 1363
> BO34934.pep
MTYDERSSDGSSSSETHDSFAHLLATKQGQSQTPATAMPKHIPFPEHATT
SEWLSELIMCAFTMGSAIVQFINIYRTNWWLPQAHTRHMVNIELIDPYLR
YLLLILNTRRLIYCLLLVKIRKRNEKSRHLIRLGIKYGFGGLVQLSLGFC
AMKLYQKHTYILLLFLFYPVVIYLLIFGFQLEPFLRTRFELPGVYINDLP
VHSCTTNPVNIRDEVETLRHDFNKRFKQLIFTSMLNAYYTGLVPCCLAVS
VQYNVLRAAQHCIIVCLGAFSLCAVFLYPAKYSDTLHRATLHLGCWQRID
REPAPSQLIVAASALTWSKYSSYNHGTVVKHNGGLYRSHGMVTVATPGNA
SHARFYKLFHNPTIIYSTLAILQAAVLLVEIGSLSAESVEWHFVLSISFV
AFTSMGAFFKLVRDYLITKDLYKAEHAVAPDQPFRQRMRDAFMASFLDH
BO34934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13016-PA | 443 | CG13016-PA | 1..443 | 1..443 | 2331 | 100 | Plus |
