BO34938.complete Sequence
976 bp assembled on 2014-03-03
GenBank Submission: KX799100
> BO34938.complete
GAAGTTATCAGTCGACATGATTTCTATCTGCTGTTCTCGTTTTTCATGCA
TTTTATTTTTGCTGTTCCTGATCTTTTCCCTCGTGCTGAGCTACATATGG
TGGAGCCCGACGAAAGGAGGAACCAATCCGGAGGTCCTGCCGGTCGTTCT
GTGGCACGGAATGGGCGACACCTGCTGCGTACCCTTCAGCCTGGGTGCCA
TTATGAACCTGATCGTGGAGCAAACAAAGGGCGGCTATGTGCGATCCCTG
CAGATCGGCGGCAATGTTTTGATAGACTGGCAGAGCGGTTTCTTCATACA
TCCCAACGAACAGGTGGATTACGTTTGCAAGCAACTACTGCAGGATGAGC
ACCTGGCCAAGGGATACCACGCCATCGGATTCTCGCAAGGCGGCCAGTTT
CTGCGTGCGGTTGCCGAACGTTGCCCGAATCCGCCAATGAGGAACCTTAT
CACACTCGGTGGGCAGCACCAGGGCATCTTCGGACTGCCCATGTGCCCCA
CCTTAACCGAAAAGCCCTGTGATTATATCACGAGGCTACTGGACAACGCC
GCCTACGCACCTGAAGTGCAGAAGGCATTGGTTCAGGCCACCTACTGGCA
CGACCCGATCATGGAGAACAAATACCGCCTGGGCAGCACATTTCTCGCGG
ACATTAACAACGAGCTCTTCATCAACAAGTTCTACATTGAGAATCTGCAA
AAGCTTAAGAAATTTGTGATGGTGCAGTTCCTAAACGACACAATTGTCCA
GCCGAAGGAGTCCCAGTGGTTTCAATACTACACCACTGGGCAGAACAAAG
TCATCCAGCCCTTTACTGAGAGCAAAGTCTATCAGGATCTGGGACTGGAC
AAGATGCATCGACAAGGACAACTTGTCTTTCTCGGCGTCGAAGGTGATCA
CTTGGCCATATCCAAGGCCTGGTTTATCCAGAACATAGTGCCTCTCTTAC
TCGAAAAAGCAAGCTTTCTAGACCAT
BO34938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt1-RB | 945 | CG12108-PB | 1..942 | 17..958 | 4695 | 99.9 | Plus |
| Ppt1-RA | 945 | CG12108-PA | 1..942 | 17..958 | 4695 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt1-RB | 1286 | CG12108-RB | 189..1130 | 17..958 | 4695 | 99.9 | Plus |
| Ppt1-RA | 1165 | CG12108-RA | 68..1009 | 17..958 | 4695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8689435..8689979 | 561..17 | 2710 | 99.8 | Minus |
| X | 23542271 | X | 8689145..8689294 | 711..562 | 750 | 100 | Minus |
| X | 23542271 | X | 8688962..8689088 | 838..712 | 635 | 100 | Minus |
| X | 23542271 | X | 8688783..8688902 | 958..839 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:59:51 has no hits.
BO34938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:14 Download gff for
BO34938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt1-RA | 68..1004 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:53 Download gff for
BO34938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt1-RA | 68..1004 | 17..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:53 Download gff for
BO34938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8688788..8688902 | 839..953 | 100 | <- | Minus |
| X | 8688962..8689088 | 712..838 | 100 | <- | Minus |
| X | 8689145..8689294 | 562..711 | 100 | <- | Minus |
| X | 8689435..8689979 | 17..561 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:14 Download gff for
BO34938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8582821..8582935 | 839..953 | 100 | <- | Minus |
| arm_X | 8582995..8583121 | 712..838 | 100 | <- | Minus |
| arm_X | 8583178..8583327 | 562..711 | 100 | <- | Minus |
| arm_X | 8583468..8584012 | 17..561 | 99 | | Minus |
BO34938.pep Sequence
Translation from 16 to 976
> BO34938.pep
MISICCSRFSCILFLLFLIFSLVLSYIWWSPTKGGTNPEVLPVVLWHGMG
DTCCVPFSLGAIMNLIVEQTKGGYVRSLQIGGNVLIDWQSGFFIHPNEQV
DYVCKQLLQDEHLAKGYHAIGFSQGGQFLRAVAERCPNPPMRNLITLGGQ
HQGIFGLPMCPTLTEKPCDYITRLLDNAAYAPEVQKALVQATYWHDPIME
NKYRLGSTFLADINNELFINKFYIENLQKLKKFVMVQFLNDTIVQPKESQ
WFQYYTTGQNKVIQPFTESKVYQDLGLDKMHRQGQLVFLGVEGDHLAISK
AWFIQNIVPLLLEKASFLDH
BO34938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt1-PB | 314 | CG12108-PB | 1..314 | 1..314 | 1690 | 100 | Plus |
| Ppt1-PA | 314 | CG12108-PA | 1..314 | 1..314 | 1690 | 100 | Plus |
