BO34939.complete Sequence
2398 bp assembled on 2014-03-03
GenBank Submission: KX795583
> BO34939.complete
GAAGTTATCAGTCGACATGCTGGAGCGGATCGATGAGCAAACGGCTGCCA
TGTCGCAGCGGAGCGAGCGGCTTAAAATGATGAAGCTGCAATACCAAATG
TACTTTGCGAAATTGGTGCAGAATCAAACATTGCGATGCATCCAGCAGAC
GACGACATCGACATCGGCTCCATCCGCCGGCGGAGTGATACCAGTGCTGG
TGCAACCGCAGCCGCAGGTGACGGTGACCAATCCGCAGTCGACGCCACAG
AACTGGACGTTTGCCATGGCCACGCCCACGCAGGCGGGCATGCTTTTGAC
GCCCCAGTTTGCCGCAGCATCTCCTGCAGGTCCGCCCATGCAGCCGCCAA
CCATGCCGGCTGGCCATCCTGTTTACTATCCAGAGCTCTTTGCCGGAACT
ACAGCTCCCCTCGGCACCTCGAACCTATTCGATTTGCGCGCCACCCTGCG
CGCCTTTGATAATGAGAATGCCGATTTACCGGAGCGCATGCAGCCCCACT
TGACAGGTGATTATCAGGCGGAGCTGGGTGGCAGGAGCCAACCTTCAGCA
AGCGCAGCAGCAGGTCCAGCTGCTGCGACACCCACATCGACTTTGTCCAG
CCAGGAGAAGGGTGCGCAGCAACTGAGCAGCACTTCCTCCACGCTGGCCA
CATCCTCGCTGACATTTGATAAATTGCCAAAGACATCGTCGCCTTCGCTG
ACGTTAACTGAGCTGCCGACTGCAGGAGTAGCAACTCCTGGCCATGATGT
GGGCGGGCAACCGCAAAGGGATGCCGCCGACCTGGATGGCTGGACAAATT
CACGCGTGACTAAAGTCGAGTATGAAAAATCACCAACTGTCGTTGGCCAT
AATGAGCCGGGCCAGGAAAAGCAGACACTACGCGAGCAGCAGCATCATGA
GCCGCAGCAACAGCATCAGCAGCCATCCCACGACTTTGAAGCATACTTCG
GTGAGCTGAAAATCGATGAGTCCTCCTGGCAGAGTGGCCAACCCACACCC
ACTCCCGCACCCAGCGGCCACGAAGACAAACGCCCATTGAACGTGCGTTC
CAGCGAGTCGGGATCTGGAGTGGGAGCGGGATCAGCGGTTAGTGGCAATG
TTGGCATCAGCAACGATTTGCTGGACGAAGTCAAAGCCAGTCGGGCGGCA
CTCGAAAGAGCAGCGGCTGCGGTTGATGAGCAGCTGGCAAGGGGTAATCA
ATTGTCGCCGCCAAGCAGCCAGGACCCCAAAACCGGTGTGTCGATTGAGA
ATATTGAAAATGCCATTTACGGCGAACGGTTGACAGGAGCAGCAGGAGCA
GGAGCAGGACTACCAGCGGCAGCAGTAGCAGGAGTAGCCTCGCCTGAGGC
TATGGCAGCCGCACCAACGAAGGGATTTTTTGATAATTTGGCAGCCAACC
CATCGCCAGAGGAACATCAGGAGGTGGAGCAACAACAGCAGCAGCAGCAG
TCGACGCAGCAGGTGGAGCCGGAGCTGTCCGGGTACGGGCAATACGATGC
CAGCAGTTATGGCGATGCCAGTGAGCCCATCTATGCCAGCATCGATTCCG
CCAACCAGCAGCCAATGCAAAGCGCAAAAGTGGAGCCGCTTTACAGCGAA
ATCGGAAATCCAGCAGACTATCAGCATCAGTCGTACGCAACGGATGCGGG
TGCCGTTGCTGCAGATGTGCCGGCAGCAGTGGCAGTCGATGGTGCAGCAA
CAACGCTGGATGCCAGCGGTGCTGGCGAGGTCCTGCCGCAGGAGTACTCC
AATATTGATTACGGCAACTACGAGGCCGATCAATATGCGGCCGGCTATGA
TCCCAATGCCTATCCGGGCTATATATACGATGAGGCGACAGGCCAGTATA
TAGCCGATCCCAATGCCACCCAGTATGCAACGGATGGCAGCTACGCTGGA
CAGGACTATGATGCCAGTGCGGTGCAGAACTATGACTACAGTGCCTACGA
ACAGCAACCGGATCAACAGCAGCAGCAAGAGCAACAGGAGATGCCAGTAC
AGGAACAACTGATGCAGCAGGAGCAGCAGCAGCAGCAGGAAGCCTATCCC
GAAACAGAAGCCACACCGGAAGTGGAGGAGAGTCCAGCCGCTGCGGCGGA
GCCACCGGCACCACTGGCCACCAGTAAGCCCCTCAAACCCACATCGATAC
TCTCGACGACAGACAAACAAGCGGCGCCTAATGATGCGCAGCAGCAGCAG
CTCAAGAAGAAGAAGCGCGTTAATTTCGTTGACAGCAGCGAAACGGATGA
TAGCTCAAGCGCGAAACCGACCCAGGCCGCAAATCCAGGACCCTCCGCCG
CCCCCAGTCCAGCCACGCCCCCAGCCGCGGGCGGCAGCGAGAGTGATTTC
GATTTTTCAACCGGCAGCGAGGCAAAGAATGCAAGCTTTCTAGACCAT
BO34939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12885-RB | 2367 | CG12885-PB | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| CG12885-RA | 2367 | CG12885-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12885-RB | 3026 | CG12885-RB | 302..2671 | 11..2380 | 11835 | 100 | Plus |
| CG12885-RA | 3015 | CG12885-RA | 291..2660 | 11..2380 | 11835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27531283..27533579 | 84..2380 | 11485 | 100 | Plus |
| 3R | 32079331 | 3R | 27531011..27531085 | 11..85 | 360 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 14:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2467 | 1270..1449 | 186 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2512 | 1283..1449 | 186 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6858 | 1311..1449 | 175 | 59.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1088..1159 | 863..936 | 158 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2381 | 855..925 | 157 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1121 | 1413..1475 | 153 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6800 | 863..923 | 152 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6821 | 863..923 | 152 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2385 | 1386..1475 | 150 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2384 | 1413..1477 | 145 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6817 | 1413..1477 | 145 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1591 | 1413..1455 | 143 | 81.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2396 | 847..925 | 143 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6887 | 863..923 | 143 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6823 | 1413..1462 | 142 | 76 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1120 | 1416..1477 | 139 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6794 | 1413..1475 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6833 | 870..923 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6779 | 870..923 | 135 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2400 | 863..923 | 134 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2392 | 1405..1461 | 132 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2849 | 1401..1462 | 132 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6758 | 885..923 | 132 | 82.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6901 | 848..925 | 129 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6922 | 1426..1630 | 127 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2422 | 1401..1449 | 121 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2846 | 1411..1477 | 121 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2364 | 1418..1475 | 119 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2833 | 1410..1476 | 119 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2380 | 1392..1461 | 118 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6823 | 1401..1450 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6872 | 863..923 | 116 | 72.1 | Plus |
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 529..595 | 849..784 | 116 | 65.7 | Minus |
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 7257..7323 | 849..784 | 116 | 65.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1098..1152 | 1410..1461 | 115 | 70.9 | Plus |
BO34939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:15 Download gff for
BO34939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12885-RA | 297..2660 | 17..2382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:28:56 Download gff for
BO34939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12885-RA | 297..2660 | 17..2382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:28:56 Download gff for
BO34939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27531017..27531085 | 17..85 | 100 | -> | Plus |
| 3R | 27531285..27533579 | 86..2382 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:15 Download gff for
BO34939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23357007..23359301 | 86..2382 | 99 | | Plus |
| arm_3R | 23356739..23356807 | 17..85 | 100 | -> | Plus |
BO34939.pep Sequence
Translation from 16 to 2398
> BO34939.pep
MLERIDEQTAAMSQRSERLKMMKLQYQMYFAKLVQNQTLRCIQQTTTSTS
APSAGGVIPVLVQPQPQVTVTNPQSTPQNWTFAMATPTQAGMLLTPQFAA
ASPAGPPMQPPTMPAGHPVYYPELFAGTTAPLGTSNLFDLRATLRAFDNE
NADLPERMQPHLTGDYQAELGGRSQPSASAAAGPAAATPTSTLSSQEKGA
QQLSSTSSTLATSSLTFDKLPKTSSPSLTLTELPTAGVATPGHDVGGQPQ
RDAADLDGWTNSRVTKVEYEKSPTVVGHNEPGQEKQTLREQQHHEPQQQH
QQPSHDFEAYFGELKIDESSWQSGQPTPTPAPSGHEDKRPLNVRSSESGS
GVGAGSAVSGNVGISNDLLDEVKASRAALERAAAAVDEQLARGNQLSPPS
SQDPKTGVSIENIENAIYGERLTGAAGAGAGLPAAAVAGVASPEAMAAAP
TKGFFDNLAANPSPEEHQEVEQQQQQQQSTQQVEPELSGYGQYDASSYGD
ASEPIYASIDSANQQPMQSAKVEPLYSEIGNPADYQHQSYATDAGAVAAD
VPAAVAVDGAATTLDASGAGEVLPQEYSNIDYGNYEADQYAAGYDPNAYP
GYIYDEATGQYIADPNATQYATDGSYAGQDYDASAVQNYDYSAYEQQPDQ
QQQQEQQEMPVQEQLMQQEQQQQQEAYPETEATPEVEESPAAAAEPPAPL
ATSKPLKPTSILSTTDKQAAPNDAQQQQLKKKKRVNFVDSSETDDSSSAK
PTQAANPGPSAAPSPATPPAAGGSESDFDFSTGSEAKNASFLDH
BO34939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12885-PB | 788 | CG12885-PB | 1..788 | 1..788 | 4061 | 100 | Plus |
| CG12885-PA | 788 | CG12885-PA | 1..788 | 1..788 | 4061 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 371..964 | 174..790 | 166 | 19.1 | Plus |
