BO34940.complete Sequence
1474 bp assembled on 2014-07-17
GenBank Submission: KX799054
> BO34940.complete
GAAGTTATCAGTCGACATGGCTGCTCTGCGTTTGGTCTGCCTTTTTGTGG
TCTTGGCCATAGGACTTGTCCAATCCCTGGACATTCCGAAGATCAAAGAT
GTGCCTCTTTTGGTCAAGACTCTAAAGAATTTGAACCGTGGTCCACCACA
CCAGGTGGTGACCAAGCGTGCCAATGTCCAGGAGAAATGGATCACCCAGA
AACTGGATAACTTTAACGCGAGCAACACGCAAACCTATCAGATGCGTTAT
TTGCTCAACGATGAGTTTCAAACTGAGGGAAGTCCCATTTTCATTTACCT
GGGTGGCGAATGGGAGATTGAGGAGAGCATGGTAAGCGCTGGTCACTGGT
ATGATATGGCCCAGGAACACAATGGTGTTCTCGTCTACACTGAACATCGT
TACTATGGTCAAAGTATACCAACATCAACCATGTCAACCGAAGATCTCAA
ATACTTGGATGTTAAGCAGGCCTTGGCCGATGTGGCCGTTTTCATTGAGA
CCTTTAAGGCGGAGAACCCCCAGCTGGCCAACTCCAAGGTGATTCTGGCT
GGCGGTTCCTACTCGGCCACCATGGTGGTTTGGTTCAAGCGTCTGTATCC
CGATTTGATTGTCGGTGGCTGGGCCTCAAGTGCTCCCATTTTGGCCAAGG
TTGACTTCACCGAATACAAGGAGGTGGTGGGCCAGGCCTTCCTTCAGTTG
GGCGGCCAGAAGTGCTACGATAGGATTGAGAACGGTATTGCCGAACTGGA
ATCCATGTTCGCTAATAAACGAGGAGCTGAAGCTAGGGCCATGCTGCGCC
TGTGCAACAGTTTCGATGATCAGAACGACCTGGACTTGTGGACCCTGTTC
TCAAGTATCTCAAATATTTTCGCCGGAGTCGCTCAATACCAAGGCACCGG
CGACATTGAGTACTACTGTGACTACCTTCTGAGCTTCAATGATGATGCCA
CGGCCATTGCGAACTTTGTGTACTGGGCCTGGGGTATGGGCAATTGCATC
GATGCCAGGTACGAAGGTAGTGTTGAGTACTATCTCTGGGGAGTGGACCA
CTTTGACGCCAGTCGCCCGTGGTACTATCAGACCTGCAATGAGTATGGCT
GGTACCAGAGCTCTGGCTCAAGGAATCAACCTTTTGGCACCAAGTTCCCT
GCCACACTTTACATCAATCTATGCGGTGATGTCTTCAGTTCGCAATACGG
AAATGAACAGATCAACAACAATGCAGCCAGTACCAACGAATACTTCGGCG
GCATGGAGCCCGGCGTGGATAATATCTACATGACCCACGGCGAACTGGAT
CCCTGGAACCCGATGGGTCATGGAGTGGAGCAGGGAGCCACGGTCATCGC
CAACGCATCGCATTGCTCAGACTTCGGATCGATCAAGTCCACAGATTCCG
ACGAAATGCGGGCCTCTAAGGAGAAACTTGCTGAATTGGTTCGACAGTGG
TTGGCCGCAAGCTTTCTAGACCAT
BO34940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18493-RA | 1443 | CG18493-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
| CG3734-RB | 1422 | CG3734-PB | 1042..1114 | 1079..1151 | 185 | 83.6 | Plus |
| CG3734-RA | 1422 | CG3734-PA | 1042..1114 | 1079..1151 | 185 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18493-RA | 1566 | CG18493-RA | 16..1455 | 17..1456 | 7200 | 100 | Plus |
| CG3734-RB | 1536 | CG3734-RB | 1092..1164 | 1079..1151 | 185 | 83.6 | Plus |
| CG3734-RA | 1619 | CG3734-RA | 1175..1247 | 1079..1151 | 185 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19390878..19391345 | 427..894 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 19391627..19392021 | 1062..1456 | 1975 | 100 | Plus |
| 3R | 32079331 | 3R | 19390285..19390512 | 17..244 | 1140 | 100 | Plus |
| 3R | 32079331 | 3R | 19390640..19390822 | 244..426 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 19391398..19391567 | 894..1063 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 19389360..19389432 | 1079..1151 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:13:09 has no hits.
BO34940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:23 Download gff for
BO34940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18493-RA | 16..1455 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:56 Download gff for
BO34940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18493-RA | 16..1455 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:56 Download gff for
BO34940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19390641..19390822 | 245..426 | 100 | -> | Plus |
| 3R | 19391399..19391565 | 895..1061 | 100 | -> | Plus |
| 3R | 19391627..19392021 | 1062..1458 | 99 | | Plus |
| 3R | 19390285..19390512 | 17..244 | 100 | -> | Plus |
| 3R | 19390878..19391345 | 427..894 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:23 Download gff for
BO34940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15216363..15216544 | 245..426 | 100 | -> | Plus |
| arm_3R | 15216007..15216234 | 17..244 | 100 | -> | Plus |
| arm_3R | 15216600..15217067 | 427..894 | 100 | -> | Plus |
| arm_3R | 15217121..15217287 | 895..1061 | 100 | -> | Plus |
| arm_3R | 15217349..15217743 | 1062..1458 | 99 | | Plus |
BO34940.pep Sequence
Translation from 16 to 1474
> BO34940.pep
MAALRLVCLFVVLAIGLVQSLDIPKIKDVPLLVKTLKNLNRGPPHQVVTK
RANVQEKWITQKLDNFNASNTQTYQMRYLLNDEFQTEGSPIFIYLGGEWE
IEESMVSAGHWYDMAQEHNGVLVYTEHRYYGQSIPTSTMSTEDLKYLDVK
QALADVAVFIETFKAENPQLANSKVILAGGSYSATMVVWFKRLYPDLIVG
GWASSAPILAKVDFTEYKEVVGQAFLQLGGQKCYDRIENGIAELESMFAN
KRGAEARAMLRLCNSFDDQNDLDLWTLFSSISNIFAGVAQYQGTGDIEYY
CDYLLSFNDDATAIANFVYWAWGMGNCIDARYEGSVEYYLWGVDHFDASR
PWYYQTCNEYGWYQSSGSRNQPFGTKFPATLYINLCGDVFSSQYGNEQIN
NNAASTNEYFGGMEPGVDNIYMTHGELDPWNPMGHGVEQGATVIANASHC
SDFGSIKSTDSDEMRASKEKLAELVRQWLAASFLDH
BO34940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18493-PA | 480 | CG18493-PA | 1..480 | 1..480 | 2567 | 100 | Plus |
| CG3734-PB | 473 | CG3734-PB | 24..472 | 34..479 | 1337 | 54.1 | Plus |
| CG3734-PA | 473 | CG3734-PA | 24..472 | 34..479 | 1337 | 54.1 | Plus |
| CG3739-PB | 485 | CG3739-PB | 5..483 | 6..479 | 1199 | 48.6 | Plus |
| CG11626-PB | 379 | CG11626-PB | 1..377 | 114..477 | 616 | 37.3 | Plus |
