BO34942.complete Sequence
877 bp assembled on 2013-12-04
GenBank Submission: KX798852
> BO34942.complete
GAAGTTATCAGTCGACATGTTTCATTTGAAGCGGGAACTGAGTCAAGGCT
GCGCCTTGGCCCTCATCTGCCTGGTGTCCCTCCAGATGCAGCAGCCCGCC
CAGGCGGAGGTGTCCTCGGCTCAAGGCACTCCCCTGAGCAATCTCTATGA
TAATCTGCTGCAGCGCGAGTACGCCGGACCCGTCGTCTTTCCCAACCACC
AGGTGGAGCGTAAGGCACAGCGCTCACCCTCTCTGCGCCTGCGATTCGGA
CGCAGTGATCCGGACATGCTGAACAGCATTGTGGAAAAGCGTTGGTTCGG
CGACGTCAACCAGAAGCCCATCAGGTCGCCATCCCTGCGTCTGCGCTTCG
GCAGGCGGGATCCCAGTCTGCCGCAGATGCGGAGGACCGCCTATGATGAC
CTCCTGGAGCGGGAGCTCACCCTCAACAGCCAGCAGCAGCAGCAGCAGTT
GGGTACCGAGCCGGACTCCGATCTGGGTGCCGACTACGACGGACTGTACG
AGCGAGTGGTGCGGAAGCCACAACGACTTCGCTGGGGACGCAGTGTTCCT
CAGTTCGAGGCAAACAACGCGGACAATGAACAAATTGAACGATCGCAATG
GTACAACTCGCTTTTGAACTCGGACAAGATGCGGCGAATGCTAGTGGCCC
TCCAGCAGCAGTACGAAATTCCGGAGAACGTGGCCAGCTATGCCAACGAT
GAGGACACTGATACGGATCTGAATAACGATACGTCGGAGTTCCAAAGGGA
AGTCCGTAAACCAATGCGCTTGCGATGGGGCAGGAGCACTGGCAAAGCTC
CGTCAGAGCAAAAGCATACTCCCGAGGAAACCTCATCCATCCCACCAAAG
ACACAGAACGCAAGCTTTCTAGACCAT
BO34942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-RB | 846 | CG13968-PB | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-RB | 2447 | CG13968-RB | 452..1294 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20054277..20054736 | 124..583 | 2300 | 100 | Plus |
| 2L | 23513712 | 2L | 20054879..20055109 | 584..814 | 1155 | 100 | Plus |
| 2L | 23513712 | 2L | 20054113..20054222 | 17..126 | 550 | 100 | Plus |
| 2L | 23513712 | 2L | 20055174..20055220 | 813..859 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:36:59 has no hits.
BO34942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:05 Download gff for
BO34942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-RB | 458..1294 | 23..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:25 Download gff for
BO34942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-RB | 458..1294 | 23..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:25 Download gff for
BO34942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20054119..20054221 | 23..125 | 100 | -> | Plus |
| 2L | 20054279..20054736 | 126..583 | 100 | -> | Plus |
| 2L | 20054879..20055109 | 584..814 | 100 | -> | Plus |
| 2L | 20055176..20055220 | 815..861 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:05 Download gff for
BO34942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20054119..20054221 | 23..125 | 100 | -> | Plus |
| arm_2L | 20054279..20054736 | 126..583 | 100 | -> | Plus |
| arm_2L | 20054879..20055109 | 584..814 | 100 | -> | Plus |
| arm_2L | 20055176..20055220 | 815..861 | 95 | | Plus |
BO34942.pep Sequence
Translation from 16 to 877
> BO34942.pep
MFHLKRELSQGCALALICLVSLQMQQPAQAEVSSAQGTPLSNLYDNLLQR
EYAGPVVFPNHQVERKAQRSPSLRLRFGRSDPDMLNSIVEKRWFGDVNQK
PIRSPSLRLRFGRRDPSLPQMRRTAYDDLLERELTLNSQQQQQQLGTEPD
SDLGADYDGLYERVVRKPQRLRWGRSVPQFEANNADNEQIERSQWYNSLL
NSDKMRRMLVALQQQYEIPENVASYANDEDTDTDLNNDTSEFQREVRKPM
RLRWGRSTGKAPSEQKHTPEETSSIPPKTQNASFLDH
BO34942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-PB | 281 | CG13968-PB | 1..281 | 1..281 | 1465 | 100 | Plus |
