Clone BO34948 Report

Search the DGRC for BO34948

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG9149-RA
Protein status:BO34948.pep: Imported from assembly
Sequenced Size:1210

Clone Sequence Records

BO34948.complete Sequence

1210 bp assembled on 2013-12-04

GenBank Submission: KX800013

> BO34948.complete
GAAGTTATCAGTCGACATGTCTGACGTGTTCATCGTGTCCGCCGCCCGCA
CGCCCATTGGTAGCTTCAATGGAACGCTTTCTAAACTGAAGGCCTCCGAC
CTGGGCAGCGTGGTCATCCAGGAGGTACTCCGGCGGGCGAATGTGGAGGG
CCAGGAGGTCAACGAAGTCATCTTGGGCCAGGCTCTAAGCGCCGGTCAGG
GTCAGAATCCAGCACGTCAGGCTTCACTCAAGGCGGGTCTGCCCATTCAG
GTGCCAGCCTACGGCATAAACATGCTATGTGGTTCCGGCTTAAAAACTGT
AGCGCTGGGTTACCAGGCCATCCGCTCGGGAGACGCACAGATTGTTGTGG
CAGGAGGTCAGGAGAGCATGTCCCTGGCTCCACACGTCATGCATCTGCGG
CAGGGCGTCAAAATGGGTCCGGGCACTATGGTGGACTCGATGATCCACGA
CGGCCTAACCGATGCCATGGAGAACATACACATGGGCATCACTGCCGAGA
ATCTGGCCGATAAGTATAACATCAGTCGTGAGGCCCAGGATGCCTATGCC
GTGCTGTCGCAAAATCGAGCCGAGGAGGCCCAAAAAAAGGGTTACTTCGA
CAAGGAGATTGTGCCCGTGGAGATCAAGGATCGCAAGGGTACGACCACAT
TCAGCAAGGATGAGTACATCAAGGCGGGCAGCACCGTCGAGGGTATACAG
AAGCTCAGGGCAGCCTTCAAAGAGGGCGGCTCTATAACCGCTGGCAATGC
CTCAGGCGTCAACGACTCCGCTGCTGCCGTACTACTGATGTCCGGCGAGG
AGGTGGCCAGGAAGGGTCTTAAGCCGCTGGCTAGGATTGTGGGCTGGACT
CAGAGTGGCATTGAGCCAAAGGTGATGGGACTGGGACCAGTCACAGCTGT
GGAAGCATTGCTTCAAAAGATTAACTGGAAGCGTGAGGAAGTGGATCTTT
ACGAGCTGAACGAAGCATTCGCCGCCCAATCACTGGCTGTCCTGCAGGAC
CTGCAGCTGGATGCTCAGAAAGTAAATGTCAATGGCGGTGCCATTGCCCT
GGGCCACCCGATTGGAGCTTCAGGTGCCCGTGTCTTGGTCACTTTGCTCT
ATGCGCTGGAGCGCACCGGTGGAAGAAAGGGAATCGCATCGCTCTGCATC
GGTGGCGGCATGGGAATCGCCCTGGCCGTGGAGCGCCTCAGCGCAAGCTT
TCTAGACCAT

BO34948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9149-RA 1179 CG9149-PA 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9149-RA 1439 CG9149-RA 108..1283 17..1192 5880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1303548..1303978 295..725 2155 100 Plus
3L 28110227 3L 1304279..1304561 910..1192 1415 100 Plus
3L 28110227 3L 1304036..1304223 723..910 940 100 Plus
3L 28110227 3L 1303187..1303310 59..182 620 100 Plus
3L 28110227 3L 1303379..1303493 180..294 575 100 Plus
3L 28110227 3L 1303051..1303096 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 14:36:55 has no hits.

BO34948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:02 Download gff for BO34948.complete
Subject Subject Range Query Range Percent Splice Strand
CG9149-RA 108..1283 17..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:24 Download gff for BO34948.complete
Subject Subject Range Query Range Percent Splice Strand
CG9149-RA 108..1283 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:24 Download gff for BO34948.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1303051..1303093 17..59 100 -> Plus
3L 1303188..1303309 60..181 100 -> Plus
3L 1303381..1303493 182..294 100 -> Plus
3L 1303548..1303977 295..724 100 -> Plus
3L 1304038..1304223 725..910 100 -> Plus
3L 1304280..1304561 911..1194 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:02 Download gff for BO34948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1303051..1303093 17..59 100 -> Plus
arm_3L 1303188..1303309 60..181 100 -> Plus
arm_3L 1303381..1303493 182..294 100 -> Plus
arm_3L 1303548..1303977 295..724 100 -> Plus
arm_3L 1304038..1304223 725..910 100 -> Plus
arm_3L 1304280..1304561 911..1194 99   Plus

BO34948.pep Sequence

Translation from 16 to 1210

> BO34948.pep
MSDVFIVSAARTPIGSFNGTLSKLKASDLGSVVIQEVLRRANVEGQEVNE
VILGQALSAGQGQNPARQASLKAGLPIQVPAYGINMLCGSGLKTVALGYQ
AIRSGDAQIVVAGGQESMSLAPHVMHLRQGVKMGPGTMVDSMIHDGLTDA
MENIHMGITAENLADKYNISREAQDAYAVLSQNRAEEAQKKGYFDKEIVP
VEIKDRKGTTTFSKDEYIKAGSTVEGIQKLRAAFKEGGSITAGNASGVND
SAAAVLLMSGEEVARKGLKPLARIVGWTQSGIEPKVMGLGPVTAVEALLQ
KINWKREEVDLYELNEAFAAQSLAVLQDLQLDAQKVNVNGGAIALGHPIG
ASGARVLVTLLYALERTGGRKGIASLCIGGGMGIALAVERLSASFLDH

BO34948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9149-PA 392 CG9149-PA 1..392 1..392 1945 100 Plus
yip2-PA 398 CG4600-PA 8..396 4..389 820 43.4 Plus
CG10932-PB 410 CG10932-PB 22..410 1..391 754 42.1 Plus
CG10932-PA 410 CG10932-PA 22..410 1..391 754 42.1 Plus
Thiolase-PA 469 CG4581-PA 43..469 3..397 448 29.4 Plus