BO34950.complete Sequence
691 bp assembled on 2013-12-04
GenBank Submission: KX795102
> BO34950.complete
GAAGTTATCAGTCGACATGAGCTGCGGCACGAAGGCATTGAAGGTGTCCT
CCTTCGTTTTGGACTTTCTGTGCTGTGTTCTGGCGGCACTGACCATCGCG
GCTTGCTCCTATGCCCTGATTGCTTTTAGCCACAGCGTAGCCATCCGGGT
GCCCAGCATCCTGGGCATCGTCCTGGGCGGCCTGCTGTTCTTCAGCACGA
TCTTCGGCTGCATTGCTGCCCTGCGGGAGAGTATTCGCATGACCTGGATC
TATGCCGCAATACTGCTGGCCCTGGTTTTCAGTCAGATCACCGTCATCTT
GGCCCAACCCATCAACTATGAGCTGCTGGCCAACGAGACCATTTACGACG
CCTGGCAGGGACAACTTTACCACTCGGACAGAATGTCCTACTTTGAGATC
AAGTATCACTGCTGCGGACAGACGGGGCCCGCAAACTATCCGGATAGTGG
CCTGGTGATTCCGCAAAGCTGCTACTTCAACCAGAACGCCACGGTGACTA
CGGATCTCTATACGGTTGGGTGTAACCATCAGTTGGCAGCGGCCTTCGTC
AAGGGAACTCGCTGGGAGAAGATCACGGATTGGTCCGTTGTGGGTGTGGA
GATACTCACTGTCATCATCGCCGGACTCCTGGCTATAACCTTACAGAATG
CCGAGCGCCGCCGTCTTTACCGAGCAAGCTTTCTAGACCAT
BO34950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eq-RA | 660 | CG12832-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eq-RA | 1077 | CG12832-RA | 72..728 | 17..673 | 3285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7062584..7062783 | 601..402 | 1000 | 100 | Minus |
2R | 25286936 | 2R | 7063195..7063368 | 250..77 | 870 | 100 | Minus |
2R | 25286936 | 2R | 7062965..7063117 | 403..251 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7062457..7062530 | 673..600 | 370 | 100 | Minus |
2R | 25286936 | 2R | 7063437..7063498 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:37:11 has no hits.
BO34950.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:08 Download gff for
BO34950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eq-RA | 72..728 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:30 Download gff for
BO34950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eq-RA | 72..728 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:30 Download gff for
BO34950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7062455..7062528 | 602..675 | 97 | <- | Minus |
2R | 7062584..7062781 | 404..601 | 100 | <- | Minus |
2R | 7062965..7063117 | 251..403 | 100 | <- | Minus |
2R | 7063195..7063368 | 77..250 | 100 | <- | Minus |
2R | 7063439..7063498 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:08 Download gff for
BO34950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2949960..2950033 | 602..675 | 97 | <- | Minus |
arm_2R | 2950089..2950286 | 404..601 | 100 | <- | Minus |
arm_2R | 2950470..2950622 | 251..403 | 100 | <- | Minus |
arm_2R | 2950700..2950873 | 77..250 | 100 | <- | Minus |
arm_2R | 2950944..2951003 | 17..76 | 100 | | Minus |
BO34950.pep Sequence
Translation from 16 to 691
> BO34950.pep
MSCGTKALKVSSFVLDFLCCVLAALTIAACSYALIAFSHSVAIRVPSILG
IVLGGLLFFSTIFGCIAALRESIRMTWIYAAILLALVFSQITVILAQPIN
YELLANETIYDAWQGQLYHSDRMSYFEIKYHCCGQTGPANYPDSGLVIPQ
SCYFNQNATVTTDLYTVGCNHQLAAAFVKGTRWEKITDWSVVGVEILTVI
IAGLLAITLQNAERRRLYRASFLDH
BO34950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eq-PA | 219 | CG12832-PA | 1..219 | 1..219 | 1133 | 100 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..218 | 245 | 27.5 | Plus |
Tsp42Er-PA | 211 | CG12837-PA | 8..211 | 8..218 | 244 | 28.2 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..218 | 225 | 29.2 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..218 | 225 | 29.2 | Plus |