Clone BO34950 Report

Search the DGRC for BO34950

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Eq-RA
Protein status:BO34950.pep: Imported from assembly
Sequenced Size:691

Clone Sequence Records

BO34950.complete Sequence

691 bp assembled on 2013-12-04

GenBank Submission: KX795102

> BO34950.complete
GAAGTTATCAGTCGACATGAGCTGCGGCACGAAGGCATTGAAGGTGTCCT
CCTTCGTTTTGGACTTTCTGTGCTGTGTTCTGGCGGCACTGACCATCGCG
GCTTGCTCCTATGCCCTGATTGCTTTTAGCCACAGCGTAGCCATCCGGGT
GCCCAGCATCCTGGGCATCGTCCTGGGCGGCCTGCTGTTCTTCAGCACGA
TCTTCGGCTGCATTGCTGCCCTGCGGGAGAGTATTCGCATGACCTGGATC
TATGCCGCAATACTGCTGGCCCTGGTTTTCAGTCAGATCACCGTCATCTT
GGCCCAACCCATCAACTATGAGCTGCTGGCCAACGAGACCATTTACGACG
CCTGGCAGGGACAACTTTACCACTCGGACAGAATGTCCTACTTTGAGATC
AAGTATCACTGCTGCGGACAGACGGGGCCCGCAAACTATCCGGATAGTGG
CCTGGTGATTCCGCAAAGCTGCTACTTCAACCAGAACGCCACGGTGACTA
CGGATCTCTATACGGTTGGGTGTAACCATCAGTTGGCAGCGGCCTTCGTC
AAGGGAACTCGCTGGGAGAAGATCACGGATTGGTCCGTTGTGGGTGTGGA
GATACTCACTGTCATCATCGCCGGACTCCTGGCTATAACCTTACAGAATG
CCGAGCGCCGCCGTCTTTACCGAGCAAGCTTTCTAGACCAT

BO34950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eq-RA 660 CG12832-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eq-RA 1077 CG12832-RA 72..728 17..673 3285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7062584..7062783 601..402 1000 100 Minus
2R 25286936 2R 7063195..7063368 250..77 870 100 Minus
2R 25286936 2R 7062965..7063117 403..251 765 100 Minus
2R 25286936 2R 7062457..7062530 673..600 370 100 Minus
2R 25286936 2R 7063437..7063498 78..17 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:37:11 has no hits.

BO34950.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:08 Download gff for BO34950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 72..728 17..675 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:30 Download gff for BO34950.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 72..728 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:30 Download gff for BO34950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7062455..7062528 602..675 97 <- Minus
2R 7062584..7062781 404..601 100 <- Minus
2R 7062965..7063117 251..403 100 <- Minus
2R 7063195..7063368 77..250 100 <- Minus
2R 7063439..7063498 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:08 Download gff for BO34950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2949960..2950033 602..675 97 <- Minus
arm_2R 2950089..2950286 404..601 100 <- Minus
arm_2R 2950470..2950622 251..403 100 <- Minus
arm_2R 2950700..2950873 77..250 100 <- Minus
arm_2R 2950944..2951003 17..76 100   Minus

BO34950.pep Sequence

Translation from 16 to 691

> BO34950.pep
MSCGTKALKVSSFVLDFLCCVLAALTIAACSYALIAFSHSVAIRVPSILG
IVLGGLLFFSTIFGCIAALRESIRMTWIYAAILLALVFSQITVILAQPIN
YELLANETIYDAWQGQLYHSDRMSYFEIKYHCCGQTGPANYPDSGLVIPQ
SCYFNQNATVTTDLYTVGCNHQLAAAFVKGTRWEKITDWSVVGVEILTVI
IAGLLAITLQNAERRRLYRASFLDH

BO34950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eq-PA 219 CG12832-PA 1..219 1..219 1133 100 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..218 245 27.5 Plus
Tsp42Er-PA 211 CG12837-PA 8..211 8..218 244 28.2 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..218 225 29.2 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..218 225 29.2 Plus