BO34951.complete Sequence
1609 bp assembled on 2014-07-07
GenBank Submission: KX798996
> BO34951.complete
GAAGTTATCAGTCGACATGCGCTCTTCGAAGTGGCTGCTTCCGGTGAGGG
TGCTGCTCACCTACCAGGTGCTGCTTCTACTCCTCCGCCAGGCGAAAGGC
GAGGAGAGCCACTGCACCTCGGTGGCAGGAATGGTCAAGCTGCTCGATTT
GGAGGCGCAGCTGATCGACAACCTAGAGGATTACGCTGTCGAGCTGGAGA
AGAAACTGCAGACCGTAAGAAGGAGCATAACAAGTCTGCGTTTGGAAAAT
GACAAAGCCCGCAGTTCCACGGAGGAGTACTTATCCAATCCCCTGAACTC
CTTTTCCCTCATTCGTCGCATGAATCGCGACTGGATTATTTGGCAACTCT
ACATGGACGATCCGGTGGGTATTTCTCAGGTGGAGCGAATCCAGGAGTTG
AGGGAACACATGCCCACCCACACGGATGTGGAGGAGGCTGTCACTGCCTT
GGATCGCATTCAAAGCACCTATGGCCTTAAAGTGCCGGAAATCTCCCATG
GATTCCTCAATGGCAAACAGTACAATGTGAGTCTCACTGTATTGGATACC
TATGCCATGGGACAAATCTTATTTGACCAGAAAAACTATTTGGCAGCTGC
TAGCTGGATCTATCAGTCCGTTGTATTGATGGAGGCCTTTTCGATGGCTG
CTCCGCTTGAGATTTCCAAAAATGAAGTGCGGATGGTATATGCTGAAACC
CTGTTAAAGCTTAACCAGCACGCCGATGCCCTGAAAGTTGTCAACATTGC
TCTGACTGATAACCCGCACGATATTAAACTGTTGCTGAAGAAGTCGGAAA
TCGAAACGATGATAAGGACGGGCACCAATAATGCGCCTCCGGTAAAGGTT
CAGGCAACAGGCGTGCCAACTGCCTACCAGATCGGCTGTCGAGGTCAGTT
CCCGCCGTCCGCGGATAGCAAGCTTTACTGTCTGTACAACAGAACCACTT
CGCCTTTTCTGATCCTTGCTCCGCTCAAGATGGAACTGGTGGGCCTGGAT
CCTTACATGGTGCTCTACCACGATGTGCTCTCACCCAAGGAAATCAAAGA
GCTCCAAGGTATGGCCACTCCTGGTCTAAAAAGGGCCACCGTCTATCAGG
CCTCCTCCGGTCGGAACGAGGTGGTGAAGACCAGGACCTCCAAAGTGGCC
TGGTTCCCCGATGGCTATAACCCGCTCACTGTTCGACTTAATGCCCGCAT
CTCCGACATGACCGGGTTCAATCTCTATGGCTCCGAGATGCTGCAGCTGA
TGAACTACGGCTTGGGAGGCCACTACGACCAGCACTACGACTTCTTTAAC
AAGACTAACTCCAACATGACTGCCATGAGTGGCGATCGCATTGCGACAGT
ACTCTTCTACCTGACGGATGTAGAACAAGGTGGAGCCACCGTGTTTCCAA
ACATTAGAAAGGCCGTCTTCCCACAACGCGGATCTGTGGTAATGTGGTAC
AATCTCAAGGACAACGGTCAAATTGATACTCAAACTCTTCATGCCGCTTG
CCCCGTTATAGTGGGTTCCAAATGGGTGTGCAACAAGTGGATTCGAGAGC
GCGAACAGATATTCAGCAGACCTTGCCTCAAAAAGCGAATGGCAAGCTTT
CTAGACCAT
BO34951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaPV-RA | 1578 | CG31015-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| CG31013-RA | 1605 | CG31013-PA | 1324..1389 | 1331..1396 | 195 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaPV-RA | 1949 | CG31015-RA | 56..1630 | 17..1591 | 7875 | 100 | Plus |
| CG31013-RA | 1766 | CG31013-RA | 1371..1436 | 1331..1396 | 195 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30646899..30647359 | 1306..846 | 2305 | 100 | Minus |
| 3R | 32079331 | 3R | 30647897..30648201 | 525..221 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 30648290..30648496 | 223..17 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 30647648..30647835 | 713..526 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 30646552..30646717 | 1526..1361 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30647439..30647574 | 849..714 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 30646425..30646490 | 1591..1526 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 30646787..30646840 | 1360..1307 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:09:26 has no hits.
BO34951.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:30 Download gff for
BO34951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaPV-RA | 56..1630 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:38 Download gff for
BO34951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PH4alphaPV-RA | 56..1630 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:38 Download gff for
BO34951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30647897..30648199 | 223..525 | 100 | <- | Minus |
| 3R | 30648291..30648496 | 17..222 | 100 | | Minus |
| 3R | 30646422..30646489 | 1527..1593 | 97 | <- | Minus |
| 3R | 30646552..30646717 | 1361..1526 | 100 | <- | Minus |
| 3R | 30646787..30646840 | 1307..1360 | 100 | <- | Minus |
| 3R | 30646899..30647357 | 848..1306 | 100 | <- | Minus |
| 3R | 30647441..30647574 | 714..847 | 100 | <- | Minus |
| 3R | 30647648..30647835 | 526..713 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:30 Download gff for
BO34951.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26473619..26473921 | 223..525 | 100 | <- | Minus |
| arm_3R | 26474013..26474218 | 17..222 | 100 | | Minus |
| arm_3R | 26472144..26472211 | 1527..1593 | 97 | <- | Minus |
| arm_3R | 26472274..26472439 | 1361..1526 | 100 | <- | Minus |
| arm_3R | 26472509..26472562 | 1307..1360 | 100 | <- | Minus |
| arm_3R | 26472621..26473079 | 848..1306 | 100 | <- | Minus |
| arm_3R | 26473163..26473296 | 714..847 | 100 | <- | Minus |
| arm_3R | 26473370..26473557 | 526..713 | 100 | <- | Minus |
BO34951.pep Sequence
Translation from 16 to 1609
> BO34951.pep
MRSSKWLLPVRVLLTYQVLLLLLRQAKGEESHCTSVAGMVKLLDLEAQLI
DNLEDYAVELEKKLQTVRRSITSLRLENDKARSSTEEYLSNPLNSFSLIR
RMNRDWIIWQLYMDDPVGISQVERIQELREHMPTHTDVEEAVTALDRIQS
TYGLKVPEISHGFLNGKQYNVSLTVLDTYAMGQILFDQKNYLAAASWIYQ
SVVLMEAFSMAAPLEISKNEVRMVYAETLLKLNQHADALKVVNIALTDNP
HDIKLLLKKSEIETMIRTGTNNAPPVKVQATGVPTAYQIGCRGQFPPSAD
SKLYCLYNRTTSPFLILAPLKMELVGLDPYMVLYHDVLSPKEIKELQGMA
TPGLKRATVYQASSGRNEVVKTRTSKVAWFPDGYNPLTVRLNARISDMTG
FNLYGSEMLQLMNYGLGGHYDQHYDFFNKTNSNMTAMSGDRIATVLFYLT
DVEQGGATVFPNIRKAVFPQRGSVVMWYNLKDNGQIDTQTLHAACPVIVG
SKWVCNKWIREREQIFSRPCLKKRMASFLDH
BO34951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PH4alphaPV-PA | 525 | CG31015-PA | 1..525 | 1..525 | 2716 | 100 | Plus |
| CG31013-PA | 534 | CG31013-PA | 10..526 | 12..523 | 1052 | 43.1 | Plus |
| CG31524-PA | 536 | CG31524-PA | 1..525 | 8..527 | 807 | 34 | Plus |
| CG31524-PB | 535 | CG31524-PB | 1..524 | 8..527 | 805 | 34.2 | Plus |
| PH4alphaNE2-PA | 542 | CG9720-PA | 4..531 | 6..527 | 801 | 33.3 | Plus |
