Clone BO34955 Report

Search the DGRC for BO34955

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:349
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG13082-RA
Protein status:BO34955.pep: Imported from assembly
Sequenced Size:1165

Clone Sequence Records

BO34955.complete Sequence

1165 bp assembled on 2013-12-04

GenBank Submission: KX794571

> BO34955.complete
GAAGTTATCAGTCGACATGGCCTGGAAGACTTTCACGCTTCTACCCCTGC
TATTGGCAGCAGGTCTAGCTAATCCCTTGAGCTCCACAACGGAGCCATCT
ACCCCACCAGCTGCCAATCCTGACGTGCCGCAGATCATAAAGGAGGAGCA
CTTCCCGGCCATGGCCCCGGCCCAGGCTCTGGAGTCCAGCGGATCCAGTG
GGCAACCCATAATGCTGCAACCTCCTCTCGAATCGCCCAGCGCAGATGAG
GACGCACTGCGTCGCCGCACAATCACGTATGATCAGCGCCAGGAGGGGCA
GTACAACATTCGTGCTGATCTGGAGAACTTCATGATCCTCCTGATTCCAC
CTGGACCGCAGGAGGGCATCAGCCTGCTGGAGCTACTGGGTCGCGGAAAC
ACCAAGGGCAGTGGATCGCTCAAGCGCAAACATCCCGCGAGGAGCAACTC
ACTGAAGTCCTTCTACCAGAAAAGTCAGCTGCAGAAGTTGCAGCAGCAAC
AGAATCAGCGCCAATCCTCGCCAGCGGCGCATCTGCCGGAGTTCATTGAG
GGTCGGTCGCCCTATCACGTGGACATCTCAGCCAGCGATCCGGAGCAGGC
TCAACGCCTGCAGCGCCAGCAGGTGGACGTGCTGCCTCCGCAACTGATAC
CCATGCCGCAGCTAATTAAGCCCTTCCACTTGGAGGCGGAACCGGAGTTG
ATTCAAGCTCTGCCCCCCGTCTCCGCCAGCAGCAGTGCCGGTTCTAATCT
CCTCGAGAGCTTCAATCATCCCGGATCGCAGTACTTCCGCAGCTCCCGCT
CCTTGAGAGGCGATAGCTATCTGGATACCAATCGCCTGACCGGCGGCGAT
TATGCCAGTCCGCGCTCCATTAGTGCCCCCATTTACCGCAGCGATCTTGG
CAGAGGAGCCAATGGCCTTTACCCCCCCATCGACGCACCCACCTACTTCT
CGGACCAATCGCGCTCCTGGCAACTGGACGAGGAACCCACTCGGGCACAA
GCGGTGGAACCGGAGATCGTTAGCTTCGATCTGTTGGCCGACGACGACCT
GGCCGAGTCCCGAACCCTCCTCCGGGACGGACTGGCGCGCTGCGCTCGCG
GAGAACGTCGTGATAGCTACGGCGAATGTCGCCAGATCGAGGGCTATGCA
AGCTTTCTAGACCAT

BO34955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13082-RA 1134 CG13082-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13082-RA 1316 CG13082-RA 72..1202 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19538496..19539626 17..1147 5655 100 Plus
Blast to na_te.dros performed 2014-11-28 14:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2381 465..514 115 70 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 978..1037 476..532 113 68.3 Plus

BO34955.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:09 Download gff for BO34955.complete
Subject Subject Range Query Range Percent Splice Strand
CG13082-RA 72..1202 17..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:31 Download gff for BO34955.complete
Subject Subject Range Query Range Percent Splice Strand
CG13082-RA 72..1202 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:31 Download gff for BO34955.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19538496..19539626 17..1149 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:09 Download gff for BO34955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19538496..19539626 17..1149 99   Plus

BO34955.pep Sequence

Translation from 16 to 1165

> BO34955.pep
MAWKTFTLLPLLLAAGLANPLSSTTEPSTPPAANPDVPQIIKEEHFPAMA
PAQALESSGSSGQPIMLQPPLESPSADEDALRRRTITYDQRQEGQYNIRA
DLENFMILLIPPGPQEGISLLELLGRGNTKGSGSLKRKHPARSNSLKSFY
QKSQLQKLQQQQNQRQSSPAAHLPEFIEGRSPYHVDISASDPEQAQRLQR
QQVDVLPPQLIPMPQLIKPFHLEAEPELIQALPPVSASSSAGSNLLESFN
HPGSQYFRSSRSLRGDSYLDTNRLTGGDYASPRSISAPIYRSDLGRGANG
LYPPIDAPTYFSDQSRSWQLDEEPTRAQAVEPEIVSFDLLADDDLAESRT
LLRDGLARCARGERRDSYGECRQIEGYASFLDH

BO34955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13082-PA 377 CG13082-PA 1..377 1..377 1943 100 Plus