BO34956.complete Sequence
1972 bp assembled on 2014-07-17
GenBank Submission: KX800068
> BO34956.complete
GAAGTTATCAGTCGACATGTCACTAGACGGTGGCCAGAATCTTAACTTGG
ATGCGGCGGCCATTGGCCCAGATCCATGTGGATCCGTTCCAGCAACACCT
GGCATTGGATTATGGAGTGGCATGGTGACCATTCTTGTGCAAACGCTTCT
ATCGTCCCAGTGTCTAGTTTCGCCCGCCAGCCAGTGGCCAGTGGACTATG
TTGGCGATTTGAGTCAACCCTACGATTTTGTGGTCATTGGAGCAGGATCT
GCGGGATCCGTGGTGGCCAGCCGGCTGAGCGAGAATCCCGACTGGAGAGT
GCTCGTCCTGGAGGCGGGCGGTGATCCACCCGTCGAATCTGAGTTGCCGG
CACTATTCTTTGGACTGCAGCACACGAACTTCACGTGGAATTACTTCACA
GAGCCCAGTGATGAGGCCTGTCAGGCAATGAAAGATGGTCGCTGCTATTG
GCCACGAGGCAAAATGCTGGGAGGATCGGGAGGAGTGAATGCCATGCTAT
ATGTTCGTGGCAATCGCAGGGACTTCGATGGCTGGGCGGCAATGGGAAGC
ACGGGCTGGAGCTATGATCAAGTGATGCCGTTCTTCGAAAAGTCGGTCAC
GCCTCAAGGTAATGCCACCCATCCTAAGGGTTATGTAACCCTAAAACCGT
TCGAGCGAAAAGATAATGACATACATCAAATGATCATCGATGGAGGTCGG
GAGTTGGGACAGCCATATGTGGAGAGATTCCAAGAGGGCAGTGATACGGG
CTATTCCCATGTGCCGGGTACCGTGAGACAAGGTCAAAGGATGAGCACAG
GCAAAGGATATTTGGGTGCAGTCTCCAAGTCTCGTCCCAATCTTCATGTG
GTCAAGAATGCACTGGTCACCAAATTGGATCTCGATGGCGAAACGGTGAA
AGAAGTTAAATTCGAAAGGGCTGGTGTTACCCATCGAGTGAAAGTGACCA
AGGATGTGGTGATCTCGGCCGGCGCCATCGATTCACCAGCACTTCTCCTG
CGTTCCGGCATTGGGCCCAGTAAACATTTGAAGGAGTTGGGCATACCCGT
AAAACTAGATCTTCCAGGAGTTGGACGCAATCTCCAGGATCATGTCCTTG
TGCCCGTCTTTTTGAGACTGGATGAGGGTCAAGGCGAGCCAATGACGGAT
CAGGCTGCCCTGGATAGCATATATCAGTACCTAATCTATCGCGCCGGACC
TCTGGCTGCTCACAGCACCGCCTCCTTGGTGGGGTTTATAAACACAAATG
CGAGTAGCGATGGTGCTTATCCGGATACCGAGAACCATCATATGTTCTTT
CAGAGAGCCCATCACGCTTCGCTAGAACTTTTTACCAAGGGTCTATCCAT
TCAAGACCAATATACAGAAGTATTGCAAGAATATCTTAAGGACTCCCATT
TGCTGTGCGTTTTTGTTCTACTCTCACATCCTGCGGCCAGAGGTGAATTG
CGTCTAAAGAGTACAGATCCCAAGGTGCCGCCGATCCTAACCAGTAATTA
TCTAACGGAATCGGAGGATGTGGCCACCTTGATGAGGGGCATACGCTACA
TCGAGTCCCTCGAACAGACGAAAGCTTTTCAGGATCATCTGGCCGAGATC
GCTAGGATTCCGATTAAAGAGTGCGATCAAATAGAGAACTACCGCAGTGA
GGAGTACTGGCGATGCTATGCCAAATACTTCACCGTCACCTGTTACCATC
AATCGGGCACCGTGAAAATGGGCCCCGACTACGATAACGAGGCCTGTGTG
AGTCAGCGTTTGAAGGTCCATGGATTGGAGAACCTTAGAGTGGCGGATGC
CAGCATAATGCCAGCGGTGGTCAGTGCCAATACAAATGCGGCCACGGTGA
TGATTGGTGAGAGGGCGGCCCACTTCATCCAGGAGGATTACCAGGGTGAG
GCAGTTGGCGCCAATGGAGGTCTATGGGTGCCGCATATGCATGCGGATGA
ATTCGCAAGCTTTCTAGACCAT
BO34956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-RB | 1941 | CG9509-PB | 1..1938 | 17..1954 | 9690 | 100 | Plus |
| CG9509-RA | 1941 | CG9509-PA | 1..1938 | 17..1954 | 9690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-RB | 2980 | CG9509-RB | 703..2640 | 17..1954 | 9690 | 100 | Plus |
| CG9509-RA | 2342 | CG9509-RA | 65..2002 | 17..1954 | 9690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14906674..14908286 | 1954..342 | 8065 | 100 | Minus |
| X | 23542271 | X | 14908680..14909006 | 343..17 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:13:27 has no hits.
BO34956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:29 Download gff for
BO34956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9509-RA | 65..2002 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:04 Download gff for
BO34956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9509-RA | 65..2002 | 17..1956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:04 Download gff for
BO34956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14906672..14908284 | 344..1956 | 99 | <- | Minus |
| X | 14908680..14909006 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:29 Download gff for
BO34956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14800705..14802317 | 344..1956 | 99 | <- | Minus |
| arm_X | 14802713..14803039 | 17..343 | 100 | | Minus |
BO34956.pep Sequence
Translation from 16 to 1972
> BO34956.pep
MSLDGGQNLNLDAAAIGPDPCGSVPATPGIGLWSGMVTILVQTLLSSQCL
VSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEA
GGDPPVESELPALFFGLQHTNFTWNYFTEPSDEACQAMKDGRCYWPRGKM
LGGSGGVNAMLYVRGNRRDFDGWAAMGSTGWSYDQVMPFFEKSVTPQGNA
THPKGYVTLKPFERKDNDIHQMIIDGGRELGQPYVERFQEGSDTGYSHVP
GTVRQGQRMSTGKGYLGAVSKSRPNLHVVKNALVTKLDLDGETVKEVKFE
RAGVTHRVKVTKDVVISAGAIDSPALLLRSGIGPSKHLKELGIPVKLDLP
GVGRNLQDHVLVPVFLRLDEGQGEPMTDQAALDSIYQYLIYRAGPLAAHS
TASLVGFINTNASSDGAYPDTENHHMFFQRAHHASLELFTKGLSIQDQYT
EVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKVPPILTSNYLTESE
DVATLMRGIRYIESLEQTKAFQDHLAEIARIPIKECDQIENYRSEEYWRC
YAKYFTVTCYHQSGTVKMGPDYDNEACVSQRLKVHGLENLRVADASIMPA
VVSANTNAATVMIGERAAHFIQEDYQGEAVGANGGLWVPHMHADEFASFL
DH
BO34956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-PB | 646 | CG9509-PB | 1..646 | 1..646 | 3414 | 100 | Plus |
| CG9509-PA | 646 | CG9509-PA | 1..646 | 1..646 | 3414 | 100 | Plus |
| CG9512-PB | 623 | CG9512-PB | 19..617 | 36..627 | 1144 | 39.2 | Plus |
| CG9512-PA | 623 | CG9512-PA | 19..617 | 36..627 | 1144 | 39.2 | Plus |
| CG12398-PA | 633 | CG12398-PA | 49..625 | 61..626 | 968 | 37.6 | Plus |
