BO34971.complete Sequence
1723 bp assembled on 2014-07-07
GenBank Submission: KX798664
> BO34971.complete
GAAGTTATCAGTCGACATGTTTGACAACGCGATTAAACCTCATCCGGAGG
CCAATGGAGCTCCAATAAATGCAGCAGGAGATCGGCCGATAACTACTGTC
ATTAATATTGAACCAGAACCAGAAACCGAAAGTCCAATTGGGATCTTCAC
ATCACAACCGGAAAGTCAACAACAACAACCCGAGCAGCTCCAATCCGAAT
CCGAGTCCGACAGAATGGCCAATTTTGACGATACGTTGCAACGCGCCCGC
CTTGCCTTTTCCAGTGGAAAGACCAGGAATGTCAGCTTTCGACGCAAGCA
GCTGGAGAATTTGCTGCGTTGCTATGAGGAGCACGAGAACGAGATCATCA
GCGCCTTGGAGGCGGATCTGCGACGTCCCAAGCAGGAGAGCCTCATCGTG
GAAACGGAATTCATGAAGAACGACATCAGGCACATCCTATTCCAGCTCGA
CGAGTGGGTGCAGTCGGAGAAGCCGCCCAAGTCGTTTGTGAACATGATGG
ACGACGTCCAGATCTACAATGACCCCTTCGGAGTGGTTCTGGTGATCGGC
GCCTGGAACTACCCGCTGCAGCTGCTGCTCGTGCCAGTGGCTTCCGCCAT
CGCCGCCGGAAACTGTGTGGTGATCAAGCCCAGCGAGATTGCCGCCAACT
GCGCCAAGTTCATTGCCGATGTCATTCCAAAATATTTGGATAATGATTGC
TATCCAGTTGTCTGCGGTGGACCCAGCGAAACGGCGGAGCTGCTCAACCA
GCGTTTCGACTACATCTTCTACACGGGCTCCACGCGCGTAGGCAAGATTA
TCCACGCCGCGGCCAACAAGTACTTGACCCCCACCACCTTGGAGCTGGGT
GGCAAAAGCCCCTGCTACATTGACAAATCTGTGGACATGCGCACTGCGGT
CAAGCGCATCCTGTGGGGCAAGCTGATTAACTGCGGACAGACCTGCATCG
CTCCGGACTACATCCTCTGCTCCAAGGAGGTGCAGGAGAAGTTCATCGTG
GAGGCCAAGGACGTGCTGAAGGAATGGTACGGCGAGAATATCCAGAGCAG
TCCGGATCTAAGCCGTGTGATCAACGCCAACAACTTCCAGCGCCTTCTTG
GCCTAATGAAGTCCGGCCGCGTGGCCGTCGGAGGTAACTACGATGCCAGC
GAGCGTTTCATCGAACCCACCATCTTGGTGGACGTGAAGGAGACCGATCC
CATCATGGAGGAGGAGATCTTCGGCCCCATCTTGCCCATCTTCAATGTGG
AGAGTGCCTACGATGCCATCAAGTTCATCAATGCCAGAGAGAGTCCACTT
GTCCTGTACATTTTCACGCCGACAGCAGAGGTTCAGAATCTGTTCATAAA
CGGCACCCAGTCGGGCGGACTGTGCGTGAACGACACGATAATGCACTATG
CCGTTGATGTGCTGCCCTTCGGAGGCGTCGGCATGAGCGGCATGGGCAGA
TATCATGGAAAGTACGGCTTCGAGACCTTCACGCACAAGAAATCTTGCCT
GGGCAAGGACTTATCCCCGTTGGGCGAGAAGTTGTCATCAGCTCGGTACC
CACCCTACTCGGACCGCAAGGGATCGCTGCTCTCGTTCCTGCTGCGCAAG
CGCCGTCCGCTGCCCAACCTGCATCTGAGCCACGTGCTGGCCATCGGACT
GGGAGTCGGATTGACGGTGCTGACCAACTACTACCTACAGAAAAGCTCAA
CTGATGCAAGCTTTCTAGACCAT
BO34971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RP | 1692 | CG11140-PP | 1..1689 | 17..1705 | 8445 | 100 | Plus |
| Aldh-III-RN | 1692 | CG11140-PN | 1..1671 | 17..1690 | 8290 | 99.8 | Plus |
| Aldh-III-RQ | 1695 | CG11140-PQ | 1..1674 | 17..1690 | 7605 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-RP | 2306 | CG11140-RP | 461..2149 | 17..1705 | 8445 | 100 | Plus |
| Aldh-III-RN | 2352 | CG11140-RN | 244..1914 | 17..1690 | 8290 | 99.8 | Plus |
| Aldh-III-RR | 1840 | CG11140-RR | 88..1683 | 110..1705 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7469614..7469847 | 1090..857 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 7470393..7470617 | 695..471 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 7469360..7469557 | 1287..1090 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 7470702..7470883 | 472..291 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 7469909..7470072 | 858..695 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7467483..7467633 | 1690..1540 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 7467691..7467827 | 1539..1403 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 7473722..7473844 | 232..110 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 7469110..7469227 | 1403..1286 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 7473288..7473346 | 291..233 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 7475440..7475494 | 71..17 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 7475342..7475381 | 110..71 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:09:32 has no hits.
BO34971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:32 Download gff for
BO34971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RP | 467..2149 | 23..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:40 Download gff for
BO34971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-III-RP | 467..2149 | 23..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:40 Download gff for
BO34971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7467483..7467633 | 1540..1690 | 100 | <- | Minus |
| 2R | 7467691..7467826 | 1404..1539 | 100 | <- | Minus |
| 2R | 7469110..7469225 | 1288..1403 | 100 | <- | Minus |
| 2R | 7469360..7469557 | 1090..1287 | 100 | <- | Minus |
| 2R | 7469615..7469845 | 859..1089 | 100 | <- | Minus |
| 2R | 7469909..7470072 | 695..858 | 100 | <- | Minus |
| 2R | 7470394..7470615 | 473..694 | 100 | <- | Minus |
| 2R | 7470702..7470882 | 292..472 | 100 | <- | Minus |
| 2R | 7473288..7473346 | 233..291 | 100 | <- | Minus |
| 2R | 7473722..7473843 | 111..232 | 100 | <- | Minus |
| 2R | 7475342..7475380 | 72..110 | 100 | <- | Minus |
| 2R | 7475440..7475488 | 23..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:32 Download gff for
BO34971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3354988..3355138 | 1540..1690 | 100 | <- | Minus |
| arm_2R | 3355196..3355331 | 1404..1539 | 100 | <- | Minus |
| arm_2R | 3356615..3356730 | 1288..1403 | 100 | <- | Minus |
| arm_2R | 3356865..3357062 | 1090..1287 | 100 | <- | Minus |
| arm_2R | 3357120..3357350 | 859..1089 | 100 | <- | Minus |
| arm_2R | 3357414..3357577 | 695..858 | 100 | <- | Minus |
| arm_2R | 3357899..3358120 | 473..694 | 100 | <- | Minus |
| arm_2R | 3358207..3358387 | 292..472 | 100 | <- | Minus |
| arm_2R | 3360793..3360851 | 233..291 | 100 | <- | Minus |
| arm_2R | 3361227..3361348 | 111..232 | 100 | <- | Minus |
| arm_2R | 3362847..3362885 | 72..110 | 100 | <- | Minus |
| arm_2R | 3362945..3362993 | 23..71 | 100 | | Minus |
BO34971.pep Sequence
Translation from 16 to 1723
> BO34971.pep
MFDNAIKPHPEANGAPINAAGDRPITTVINIEPEPETESPIGIFTSQPES
QQQQPEQLQSESESDRMANFDDTLQRARLAFSSGKTRNVSFRRKQLENLL
RCYEEHENEIISALEADLRRPKQESLIVETEFMKNDIRHILFQLDEWVQS
EKPPKSFVNMMDDVQIYNDPFGVVLVIGAWNYPLQLLLVPVASAIAAGNC
VVIKPSEIAANCAKFIADVIPKYLDNDCYPVVCGGPSETAELLNQRFDYI
FYTGSTRVGKIIHAAANKYLTPTTLELGGKSPCYIDKSVDMRTAVKRILW
GKLINCGQTCIAPDYILCSKEVQEKFIVEAKDVLKEWYGENIQSSPDLSR
VINANNFQRLLGLMKSGRVAVGGNYDASERFIEPTILVDVKETDPIMEEE
IFGPILPIFNVESAYDAIKFINARESPLVLYIFTPTAEVQNLFINGTQSG
GLCVNDTIMHYAVDVLPFGGVGMSGMGRYHGKYGFETFTHKKSCLGKDLS
PLGEKLSSARYPPYSDRKGSLLSFLLRKRRPLPNLHLSHVLAIGLGVGLT
VLTNYYLQKSSTDASFLDH
BO34971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-III-PP | 563 | CG11140-PP | 1..563 | 1..563 | 2935 | 100 | Plus |
| Aldh-III-PN | 563 | CG11140-PN | 1..557 | 1..558 | 2895 | 99.8 | Plus |
| Aldh-III-PQ | 564 | CG11140-PQ | 1..558 | 1..558 | 2792 | 96.1 | Plus |
| Aldh-III-PO | 563 | CG11140-PO | 1..557 | 1..558 | 2776 | 95.9 | Plus |
| Aldh-III-PR | 497 | CG11140-PR | 1..497 | 67..563 | 2592 | 100 | Plus |
