BO34978.complete Sequence
1066 bp assembled on 2013-12-04
GenBank Submission: KX794301
> BO34978.complete
GAAGTTATCAGTCGACATGTACGGCAACAATAATCCGGGTAGTAACAATA
ATAATGGTGGTTATCCCCCATATGGCTACAACAACAAGTCGAGTGGTGGG
CGTGGATTTGGGATGTCCCATTCTCTGCCATCCGGAATGGATACAGAATT
TTCATTTCCAAGTTCATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCT
GCGGCGGCAGCGGCGGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGC
AACATGTGCCACCTGCCGCCGATGGCCAGCAACAACTCGCTGAATAATCT
CTGCGGATTGTCGCTGGGCAGCGGTGGTAGTGATGATCTCATGAACGATC
CTCGGGCAAGCAACACCAACCTGATTGTCAACTACTTGCCCCAGGACATG
ACCGATCGCGAGCTGTACGCCCTATTCAGAGCCATTGGACCCATCAACAC
GTGCAGAATCATGCGAGACTATAAGACTGGCTACAGTTTTGGTTATGCTT
TCGTGGACTTCACATCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTG
AATGGCATCACAGTGCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCC
CGGCGGAGAATCGATCAAGGACACCAATCTGTATGTGACCAATCTGCCGC
GTACCATAACCGACGATCAGCTGGACACGATCTTCGGCAAGTACGGTTCC
ATTGTGCAGAAGAACATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGG
TGTGGCCTTTGTTCGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTT
CGGCGCTGAACAACGTAATACCCGAGGGCGGATCACAGCCGCTGTCCGTC
CGGTTGGCTGAGGAGCATGGCAAGGCGAAGGCGGCCCACTTTATGTCGCA
GATGGGCGTGGTTCCAGCAAATGTACCACCGCCGCCACCACAACCGCCAG
CACATATGGCCGCCGCATTCAACATGATGCACAGAGGCGAAAACTTTGCC
GATTTGCTTGACGGATTGTACCGTAGGAAGTACCATTATCCTTACTTAGC
AAGCTTTCTAGACCAT
BO34978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RW | 1035 | CG43770-PW | 1..1032 | 17..1048 | 5160 | 100 | Plus |
| Sxl-RJ | 1041 | CG43770-PJ | 1..971 | 17..987 | 4855 | 100 | Plus |
| Sxl-RG | 1041 | CG43770-PG | 1..971 | 17..987 | 4855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RW | 2892 | CG43770-RW | 426..1457 | 17..1048 | 5160 | 100 | Plus |
| Sxl-RJ | 1886 | CG43770-RJ | 482..1452 | 17..987 | 4855 | 100 | Plus |
| Sxl-RG | 3227 | CG43770-RG | 580..1550 | 17..987 | 4855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085955 | 475..139 | 1685 | 100 | Minus |
| X | 23542271 | X | 7084598..7084820 | 987..765 | 1115 | 100 | Minus |
| X | 23542271 | X | 7085156..7085341 | 767..582 | 930 | 100 | Minus |
| X | 23542271 | X | 7085408..7085519 | 585..474 | 560 | 100 | Minus |
| X | 23542271 | X | 7091674..7091750 | 93..17 | 385 | 100 | Minus |
| X | 23542271 | X | 7079306..7079369 | 1048..985 | 320 | 100 | Minus |
| X | 23542271 | X | 7087613..7087661 | 140..92 | 245 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 364..470 | 205 | 79.4 | Plus |
| X | 23542271 | X | 1372462..1372598 | 767..903 | 205 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-28 14:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 230..191 | 110 | 75 | Minus |
BO34978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:17 Download gff for
BO34978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RW | 426..1457 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:38 Download gff for
BO34978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RW | 426..1457 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:38 Download gff for
BO34978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7079304..7079367 | 987..1050 | 96 | <- | Minus |
| X | 7084599..7084819 | 766..986 | 100 | <- | Minus |
| X | 7085158..7085339 | 584..765 | 100 | <- | Minus |
| X | 7085410..7085517 | 476..583 | 100 | <- | Minus |
| X | 7085619..7085954 | 140..475 | 100 | <- | Minus |
| X | 7087614..7087659 | 94..139 | 100 | <- | Minus |
| X | 7091674..7091750 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:17 Download gff for
BO34978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6973337..6973400 | 987..1050 | 96 | <- | Minus |
| arm_X | 6978632..6978852 | 766..986 | 100 | <- | Minus |
| arm_X | 6979191..6979372 | 584..765 | 100 | <- | Minus |
| arm_X | 6979443..6979550 | 476..583 | 100 | <- | Minus |
| arm_X | 6979652..6979987 | 140..475 | 100 | <- | Minus |
| arm_X | 6981647..6981692 | 94..139 | 100 | <- | Minus |
| arm_X | 6985707..6985783 | 17..93 | 100 | | Minus |
BO34978.pep Sequence
Translation from 16 to 1066
> BO34978.pep
MYGNNNPGSNNNNGGYPPYGYNNKSSGGRGFGMSHSLPSGMDTEFSFPSS
SSRRGYNDFPGCGGSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSL
GSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR
DYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESI
KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR
YNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQMGVVP
ANVPPPPPQPPAHMAAAFNMMHRGENFADLLDGLYRRKYHYPYLASFLDH
BO34978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-PW | 344 | CG43770-PW | 1..344 | 1..344 | 1844 | 100 | Plus |
| Sxl-PP | 352 | CG43770-PP | 1..352 | 1..344 | 1825 | 97.7 | Plus |
| Sxl-PY | 708 | CG43770-PY | 1..352 | 1..344 | 1825 | 97.7 | Plus |
| Sxl-PH | 366 | CG43770-PH | 1..366 | 1..344 | 1805 | 93.7 | Plus |
| Sxl-PX | 722 | CG43770-PX | 1..366 | 1..344 | 1805 | 93.7 | Plus |
