BO34979.complete Sequence
811 bp assembled on 2013-12-04
GenBank Submission: KX797883
> BO34979.complete
GAAGTTATCAGTCGACATGATGGCATCTCAGGATCAAGGTTCCTCAAGTA
GGAACGACTTCGATTCTTCTGCTAAAGGAGGAAGCGGCGTCGAACAGGAA
TTGGCTACGAAAATGTTGCAAATACAATCTAAACGATTTTATTTGGATGT
AAAACAAAATAGAAGAGGCCGTTTTATAAAGGTTGCTGAGATTGGCGCTG
ATGGTAGACGAAGTCAAATTTACTTGGCTCTTTCAACTGCAGCCGAATTT
CGTGACCATTTATCCTCATTTAGCGATTACTACGCTTCTCTAGGTCCACC
AAACACCGACAATTTGCCGGAAGATGGTAAACTTAAATCTGAAATGATGA
TAAAAGATTACAGAAGGTATTACTTGGACTTAAAAGAAAATGCGCGTGGC
CGATTTTTACGGGTATCGCAAACAATAACAAGAGGGGGGCCTAGATCTCA
AATCGCTTTACCGGCTCAAGGCATGATCGAGTTTCGTGACGCTCTTACAG
ATTTGTTAGAAGAGTTTGGAGCTAATGATGGAGGGTTTAAAGGAGATTTA
CCGGAAGAGCGACACATGAAGGTGGATAATAAAAATTTTTATTTTGATAT
CGGACAAAATAATCGAGGAGTGTACATGCGGATAAGCGAAGTGAAAAATA
ACTTCCGGACTTCGATAACTATTCCAGAGAAATGTTGGATTCGCTTTCGA
GATATTTTTAATGATTATTGCGAGAAAATGAAAAAATCGTCCGACTCAAT
TACTGCCGAAATTAACTTACCTACATCTTCAAATAGTCTTAAAGCAAGCT
TTCTAGACCAT
BO34979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RG | 780 | CG1507-PG | 1..777 | 17..793 | 3885 | 100 | Plus |
| Pur-alpha-RD | 783 | CG1507-PD | 1..780 | 17..793 | 3820 | 99.6 | Plus |
| Pur-alpha-RE | 825 | CG1507-PE | 67..822 | 38..793 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-RG | 2544 | CG1507-RG | 257..1040 | 10..793 | 3890 | 99.7 | Plus |
| Pur-alpha-RD | 2547 | CG1507-RD | 257..1043 | 10..793 | 3825 | 99.4 | Plus |
| Pur-alpha-RE | 2719 | CG1507-RE | 460..1215 | 38..793 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 565601..565753 | 641..793 | 765 | 100 | Plus |
| 4 | 1348131 | 4 | 564540..564664 | 412..536 | 625 | 100 | Plus |
| 4 | 1348131 | 4 | 564359..564482 | 292..415 | 620 | 100 | Plus |
| 4 | 1348131 | 4 | 560469..560583 | 76..190 | 575 | 100 | Plus |
| 4 | 1348131 | 4 | 565409..565517 | 534..642 | 545 | 100 | Plus |
| 4 | 1348131 | 4 | 560716..560822 | 189..295 | 535 | 100 | Plus |
| 4 | 1348131 | 4 | 560372..560412 | 38..78 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:37:35 has no hits.
BO34979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:18 Download gff for
BO34979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RG | 264..1040 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:41 Download gff for
BO34979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pur-alpha-RG | 264..1040 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:41 Download gff for
BO34979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 560280..560300 | 17..37 | 100 | -> | Plus |
| 4 | 560372..560411 | 38..77 | 100 | -> | Plus |
| 4 | 560471..560583 | 78..190 | 100 | -> | Plus |
| 4 | 560718..560820 | 191..293 | 100 | -> | Plus |
| 4 | 564361..564479 | 294..412 | 100 | -> | Plus |
| 4 | 564541..564662 | 413..534 | 100 | -> | Plus |
| 4 | 565410..565515 | 535..640 | 100 | -> | Plus |
| 4 | 565601..565753 | 641..795 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:18 Download gff for
BO34979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 580906..580926 | 17..37 | 100 | -> | Plus |
| arm_4 | 580998..581037 | 38..77 | 100 | -> | Plus |
| arm_4 | 581097..581209 | 78..190 | 100 | -> | Plus |
| arm_4 | 581344..581446 | 191..293 | 100 | -> | Plus |
| arm_4 | 584987..585105 | 294..412 | 100 | -> | Plus |
| arm_4 | 585167..585288 | 413..534 | 100 | -> | Plus |
| arm_4 | 586036..586141 | 535..640 | 100 | -> | Plus |
| arm_4 | 586227..586379 | 641..795 | 98 | | Plus |
BO34979.pep Sequence
Translation from 16 to 811
> BO34979.pep
MMASQDQGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRR
GRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNL
PEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPA
QGMIEFRDALTDLLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNR
GVYMRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKMKKSSDSITAEIN
LPTSSNSLKASFLDH
BO34979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pur-alpha-PG | 259 | CG1507-PG | 1..259 | 1..259 | 1337 | 100 | Plus |
| Pur-alpha-PD | 260 | CG1507-PD | 1..260 | 1..259 | 1325 | 99.6 | Plus |
| Pur-alpha-PE | 274 | CG1507-PE | 22..274 | 7..259 | 1305 | 99.6 | Plus |
| Pur-alpha-PC | 274 | CG1507-PC | 22..274 | 7..259 | 1305 | 99.6 | Plus |
| Pur-alpha-PA | 274 | CG1507-PA | 22..274 | 7..259 | 1305 | 99.6 | Plus |
