BO34980.complete Sequence
2737 bp assembled on 2014-03-03
GenBank Submission: KX796558
> BO34980.complete
GAAGTTATCAGTCGACATGCGCCCCTACATCTGCCTCATGGAGCTGCCAA
TCAACCGACCTGGAAGCGGGAACCTGCTGCTGGGACTCACCTCCGTGGTG
GGTCTCATTGGAGGCGCCTATCTGCTGCAGTGTGGCGCCCAGCAGCTCTT
GGGCAAACTAGCCAATAAGAAGTGGAGGAAGGAGGAGTCCAGCAGCGAGG
ATCACGCCTGCAACGTCTGCTGTGCGGACCTGGATCTGAGCAGTGCCAAA
AACTACGTGACATGTTGCACCTGCGAAAAATCGGTTTGCCGCGGGCCTAA
ATGCGCCGACTGGCGGCCCAAGGACGCCAAGTGGGAGTGCCAGCTGTGCC
AGAGCTCCAAGGAGTCGCTAGCCCACACCTCCTCGTGGGTGGCCGAGCAA
ATGTCCTTCAACCAGCATAAGTTTGTCTATCCGATGAGGGCTAGGAGCGA
GGTGTATATACCGATTGTGGGCGATGGCAACGACAGCAGCATGCAATTCG
AGAGCGTTAGCCAGATTGGACAAAACGCCCACATGGACGAACGGGCCAAG
ATCCGCGAGTACGTCGAGGAGATTGTGGCCGAAATGCTGGGCGGCAATTT
GGACCACGTCAAAGTGGGGCAGCTGTCCAAGAGTGAGAACTATCTGCCGG
CCATCGTAAATGGCCATACCAACAATAGTAATAATAATAATAACAACAAC
CATGCGGACTCCGAGCTGGCCGACCTCTCGCAGACCCGACTGCGCAGTCT
CATCGAGACCATCATAGCGGAGACCCTGCGGAGCTCCACCCTCAGCGCCA
GCGGAGCCGTCTCGGAGATCAGCCTGGACACCAGGTCTCACGTCTCCGAT
CTGGCCAATGGAAACGGGCTGAAGCGGCGCCATCGCACCGAGCACTACTT
CGAGCCGAAGATCTACCAGGATCTGTTGGCCACAGCGGTGCTAAATAAGA
TTGTGGATAAGGAAGGGAATACAAGGCTGGCGGCGGAGAGTACGCCGGAC
TTGAGTGGTCGCCACATTGACGAGAATTTCAATGCCGAAGCGCTGAGCAC
CACGTCCGGAAGCTCCATTGAACCACGGAGTGATTGCAGCCTCACCGATC
ATGAAATCGGACTGGATAATGGCAAATCCCAATCCCTGCAAACGGACTTG
GAAAGGGAATCCGTGCTTAGTGACTATATAGCCGCACACATGGTGCCACT
GCCGGACTTTTCAGCATCCGTCACCGAATCCGAGGATGATATTGGATCCA
TCTCCTCGGGCATGATCGGAGATGGAAACTGGGAGGACAACTGGCTGTTC
AAGAAGAAACGCAGCTCGGCCACTCCGAGCAGCATTGGCATGCTGGTGCC
GGCACCAAGGGAGAATGTACGTGCCCAGATTGGGGATAAGACCACCGACG
AGGTGAGCGATCTCTCCGAGATTGGTTCGGACATCGAGGAGAGCTCTCTG
GATCTGCTGCGATGCAATGATCTCAACGATCGTCTGCTCAGCAAGCACCT
TATTGGTGGGCAAAACACCAAGATGGTCCTCGACGAGCTCGTAGATCGCA
CCAGTCTCACGTCCCACACATTGCCGGAGGAGAATGAGCCCGCATTCACA
GAGACAACCAATGAGTTTGTGGTATCCCCGATGGCCATGCCTTCTGATAT
AAAGGCGCCTTCTCCGACGCCACCTCCGCCACCAATGATATTCCAGGATG
ACTTGTTGAACGAGGAACCAGACCACACTCCCATCGCAGGTTCCATTGCG
GAACGCGAGGTGAAGAAGTGGTACAACGCCGTTGAAATGCCAAATAATCC
GTACTCCCCGGAGGCCCTGAAGCAGCGCATCAGCGGCACCCAGGAGCGCT
ACATGGATGTGCCCAACATCAGTCCGAGTGCTGAGCAAAAGGCACTGGCT
TCGGCGCTGACGGAAAATCCGGATCCGCCAGCGCCCAAAGCGGATTATAA
GCGCTATAGCCGCGACTACTACATCAACAATGCTCCCACATCCACTGACA
GCACGGGGGGTGGAAAGGCCGCCACAACCAGCGCAGGCGAGGATGTGGAG
GACATCGTGATCAACGAGGTAAATCAAGAACCAGAACCACATCCACCGCA
TGGCCGCATTTCAAGTGGCGCTCAGAGCACCGCTGCCGACCTCTCTCATT
GGACCCTATCCACGCCAGTGCGACGCAGTAGCTCACTAAAGTTCATTAAC
AGCCGCCCCTTCCACTCCCCCTCCCCCTCGCTGGGCTACGAGAGATCGGT
GCCCCTCGAGCGACCTTCGACCTCGGCGTCCCATTACCGCGAATCGAGTC
TGGGTTTGGGTGACGACGACGACTTTGACCTGAGATCGCAGCGCTCCTGG
CGGAGCAGCTACAGTTCACTGCCCAAGCGACACACGCAGTCCTCGCTAAG
CCTGCACAGCAATGGTAGCGGGGTGTCCTTTGGCTCGTCCGTGTCCAAGA
GACGTCCAGCGGCAGGTGGGCCCTCCGCCGGCGTGCTCACCCAGTTCGAA
AAGCAACTGCTGCACAAGGACCTCAAGCGGAATAGCTTCCGGGCGGTGTC
CGCCACATCCAAGGACTTTGTCATGAATCCGCTCTTCGAGAGCGAGCCGC
TGGGCGAAAAGCCGGCCCTGCGGCCGGAGACGGAGGACCAGGGTGACTCG
GGGGTGGACAGCTGCCTGAACGGCTTCAGCGGTGCGGACGCCAAGTACAG
CAACAATAGTCTGCTATTCGCAAGCTTTCTAGACCAT
BO34980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43340-RP | 2706 | CG43340-PP | 1..2703 | 17..2719 | 13500 | 100 | Plus |
| CG43340-RC | 2817 | CG43340-PC | 248..2814 | 153..2719 | 12820 | 100 | Plus |
| CG43340-RL | 2172 | CG43340-PL | 92..2169 | 642..2719 | 10390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43340-RP | 3585 | CG43340-RP | 332..3034 | 17..2719 | 13500 | 100 | Plus |
| CG43340-RC | 3851 | CG43340-RC | 734..3300 | 153..2719 | 12820 | 100 | Plus |
| CG43340-RL | 3181 | CG43340-RL | 553..2630 | 642..2719 | 10390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7648582..7649348 | 1953..2719 | 3835 | 100 | Plus |
| 2R | 25286936 | 2R | 7640116..7640619 | 1238..1741 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 7638598..7638905 | 642..949 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 7634759..7635000 | 253..494 | 1195 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7648294..7648510 | 1737..1953 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 7639702..7639871 | 948..1117 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 7635054..7635200 | 495..641 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 7630192..7630328 | 17..153 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 7639931..7640051 | 1118..1238 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 7634215..7634314 | 153..252 | 500 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 29..66 | 666..703 | 118 | 78.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7067..7104 | 666..703 | 118 | 78.9 | Plus |
BO34980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:26 Download gff for
BO34980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43340-RP | 332..3034 | 17..2721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:07 Download gff for
BO34980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43340-RP | 332..3034 | 17..2721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:07 Download gff for
BO34980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7634759..7635000 | 253..494 | 99 | -> | Plus |
| 2R | 7635054..7635200 | 495..641 | 100 | -> | Plus |
| 2R | 7638598..7638905 | 642..949 | 100 | -> | Plus |
| 2R | 7639704..7639871 | 950..1117 | 100 | -> | Plus |
| 2R | 7639931..7640051 | 1118..1238 | 100 | -> | Plus |
| 2R | 7634216..7634314 | 154..252 | 100 | -> | Plus |
| 2R | 7630192..7630328 | 17..153 | 100 | -> | Plus |
| 2R | 7640117..7640617 | 1239..1739 | 100 | -> | Plus |
| 2R | 7648297..7648510 | 1740..1953 | 100 | -> | Plus |
| 2R | 7648583..7649348 | 1954..2721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:26 Download gff for
BO34980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3535802..3536015 | 1740..1953 | 100 | -> | Plus |
| arm_2R | 3521721..3521819 | 154..252 | 100 | -> | Plus |
| arm_2R | 3522264..3522505 | 253..494 | 99 | -> | Plus |
| arm_2R | 3522559..3522705 | 495..641 | 100 | -> | Plus |
| arm_2R | 3517697..3517833 | 17..153 | 100 | -> | Plus |
| arm_2R | 3526103..3526410 | 642..949 | 100 | -> | Plus |
| arm_2R | 3527209..3527376 | 950..1117 | 100 | -> | Plus |
| arm_2R | 3527436..3527556 | 1118..1238 | 100 | -> | Plus |
| arm_2R | 3527622..3528122 | 1239..1739 | 100 | -> | Plus |
| arm_2R | 3536088..3536853 | 1954..2721 | 99 | | Plus |
BO34980.pep Sequence
Translation from 16 to 2737
> BO34980.pep
MRPYICLMELPINRPGSGNLLLGLTSVVGLIGGAYLLQCGAQQLLGKLAN
KKWRKEESSSEDHACNVCCADLDLSSAKNYVTCCTCEKSVCRGPKCADWR
PKDAKWECQLCQSSKESLAHTSSWVAEQMSFNQHKFVYPMRARSEVYIPI
VGDGNDSSMQFESVSQIGQNAHMDERAKIREYVEEIVAEMLGGNLDHVKV
GQLSKSENYLPAIVNGHTNNSNNNNNNNHADSELADLSQTRLRSLIETII
AETLRSSTLSASGAVSEISLDTRSHVSDLANGNGLKRRHRTEHYFEPKIY
QDLLATAVLNKIVDKEGNTRLAAESTPDLSGRHIDENFNAEALSTTSGSS
IEPRSDCSLTDHEIGLDNGKSQSLQTDLERESVLSDYIAAHMVPLPDFSA
SVTESEDDIGSISSGMIGDGNWEDNWLFKKKRSSATPSSIGMLVPAPREN
VRAQIGDKTTDEVSDLSEIGSDIEESSLDLLRCNDLNDRLLSKHLIGGQN
TKMVLDELVDRTSLTSHTLPEENEPAFTETTNEFVVSPMAMPSDIKAPSP
TPPPPPMIFQDDLLNEEPDHTPIAGSIAEREVKKWYNAVEMPNNPYSPEA
LKQRISGTQERYMDVPNISPSAEQKALASALTENPDPPAPKADYKRYSRD
YYINNAPTSTDSTGGGKAATTSAGEDVEDIVINEVNQEPEPHPPHGRISS
GAQSTAADLSHWTLSTPVRRSSSLKFINSRPFHSPSPSLGYERSVPLERP
STSASHYRESSLGLGDDDDFDLRSQRSWRSSYSSLPKRHTQSSLSLHSNG
SGVSFGSSVSKRRPAAGGPSAGVLTQFEKQLLHKDLKRNSFRAVSATSKD
FVMNPLFESEPLGEKPALRPETEDQGDSGVDSCLNGFSGADAKYSNNSLL
FASFLDH
BO34980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43340-PP | 901 | CG43340-PP | 1..901 | 1..901 | 4688 | 100 | Plus |
| CG43340-PC | 938 | CG30492-PE | 82..938 | 45..901 | 4454 | 99.9 | Plus |
| CG43340-PJ | 968 | CG43340-PJ | 82..968 | 45..901 | 4413 | 96.5 | Plus |
| CG43340-PF | 983 | CG30492-PB | 1..703 | 1..699 | 3570 | 98 | Plus |
| CG43340-PA | 983 | CG30492-PA | 1..703 | 1..699 | 3570 | 98 | Plus |
