BO34982.complete Sequence
1564 bp assembled on 2014-03-03
GenBank Submission: KX795502
> BO34982.complete
GAAGTTATCAGTCGACATGTGGCTGACCTTGATCACGGGAGCTCTGATCT
TGCTCCTCACCTGGGACTTTGGACGCAAGCGCCAACGAGTCCTCGCCTTT
GAGAAGTCCGCGATCCCAGGTCCCATTTCCATTCCGATCCTGGGCTGTGG
TCTCCAGGCTCTGCACTTGGGAGCAGAGAACATTATCGGATGGGTGGGAG
AAAAGTTCGACAAGTATGGCAAGACCTTTCGTTTTTGGATATTGGGGGAG
TCCCTGATCTACACGAAGGACCTGCAGTACTTTGAGACCATCTTGAGTAG
CACCACTCTCCTGGAAAAGGGTCAACTCTACGAGTATCTGCGACCTTTCC
TAAACGACGGCCTGCTTGTCAGCACGGGTCGAAAATGGCACGCCAGAAGG
AAGATTTTCACACACGCATTCCACTTCAAAGTCCTTGAACACTATGTGGA
GATCATGGATCGACATAGTAGCGTCATGGTGGATAATCTGCGAAAGGTGG
CCGATGGTAAGACAGCGGTGGATATGCTCAAGTATGTGTCGCTGGCAGCT
CTTGACGTGATAACAGAGGCTGCCATGGGTGTACAGGTGAATGCCCAGAA
CGACCCCGATTTTCCCTACATCAAGGCGCTGAAAAGTGTGGTCTATATCC
AACCGGATCGCATGTTCAGGTTCTCGAGGCGCTACAACTGGCTGTTCCCG
CTGGCGGCACCTTTGCTGCACCGGCAACTGCTGAGCGATATCCGCGTCAT
GCACGACTTCACCGACAAGGTCATCAGCGAGCGGCGAGAAACCGTGCGGC
GGGCTAAGGCCGACGGCACCTATCGACCGCTGAGTCTGGGTGATGCCGAG
ATCGGTAGCAAGTCGCAGATGGCTCTGCTGGACATCCTGCTGCAGTCGAG
CATCAACAATCAGCCCCTGTCCGATGCGGATATACGCGAAGAGGTCGACA
CCTTTATGTTCGAGGGCGACGACACCACCAGCAGTGGTGTGTCCCACGCC
CTCTACGCCATCGCCAGGCATCCCGAGGTTCAGCAGCGCATCTTCGAGGA
GTTGCAGCGTGTCCTGGGCCCGGACGCCTCTGCTCCAGTGACCCAAGCCC
AGTTACAGGACCTAAAGTACCTGGACTGCGTGATCAAGGAGACCATGCGA
CTGTATCCTCCAGTGCCTGCCATCGGTAGGCACGCGCAGAAGGAGCTAGA
GATCGGAGACAAGACCATTCCCGCCAACACAAGCATTTACCTGGTTCTCT
ACTACGCCCATCGGGATGCGAACTACTTTCCAGATCCCCTCAGCTTCAGG
CCAGAGCGATTCTTGGAGGACCAAGAGCAAGGCCACAATACCTTTGCCTA
TGTGCCCTTCAGTGCGGGACCCAAGAACTGCATTGGCCAGAAGTTTGCCG
TTCTGGAAATGAAGGTCCTGATCAGCAAGGTCCTCAGGTTCTATGAACTG
CTGCCCCTTGGAGAGGAGCTCAAACCCATGTTGAACTTCATCCTGCGCTC
AGCTTCGGGCATTAATGTTGGTCTAAGGCCCAGGAAGGCATTGCGTGCAA
GCTTTCTAGACCAT
BO34982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d20-RA | 1533 | CG16761-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Cyp4d21-RA | 1536 | CG6730-PA | 199..1148 | 215..1164 | 685 | 71.5 | Plus |
| Cyp4d1-RA | 1539 | CG3656-PA | 851..963 | 867..979 | 220 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d20-RA | 1817 | CG16761-RA | 140..1670 | 16..1546 | 7655 | 100 | Plus |
| Cyp4d21-RA | 1821 | CG6730-RA | 281..1230 | 215..1164 | 685 | 71.5 | Plus |
| Cyp4d1-RA | 1685 | CG3656-RA | 927..1039 | 867..979 | 220 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2476406..2477118 | 1546..834 | 3565 | 100 | Minus |
| 3L | 28110227 | 3L | 2477690..2478076 | 566..180 | 1935 | 100 | Minus |
| 3L | 28110227 | 3L | 2477183..2477383 | 835..635 | 1005 | 100 | Minus |
| 3L | 28110227 | 3L | 2478146..2478309 | 179..16 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 7606813..7607110 | 867..1164 | 395 | 75.5 | Plus |
| 3L | 28110227 | 3L | 2477444..2477516 | 636..564 | 365 | 100 | Minus |
| X | 23542271 | X | 2159851..2159963 | 979..867 | 220 | 79.6 | Minus |
| 2L | 23513712 | 2L | 5265590..5265663 | 1343..1416 | 190 | 83.8 | Plus |
| 2L | 23513712 | 2L | 5270093..5270168 | 1341..1416 | 185 | 82.9 | Plus |
| 3R | 32079331 | 3R | 30899848..30899899 | 928..979 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:00:24 has no hits.
BO34982.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:24:24 Download gff for
BO34982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d20-RA | 141..1670 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:29:06 Download gff for
BO34982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d20-RA | 141..1670 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:29:06 Download gff for
BO34982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2476403..2477118 | 834..1548 | 99 | <- | Minus |
| 3L | 2477185..2477381 | 637..833 | 100 | <- | Minus |
| 3L | 2477444..2477513 | 567..636 | 100 | <- | Minus |
| 3L | 2477690..2478076 | 180..566 | 100 | <- | Minus |
| 3L | 2478146..2478308 | 17..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:24:24 Download gff for
BO34982.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2477444..2477513 | 567..636 | 100 | <- | Minus |
| arm_3L | 2476403..2477118 | 834..1548 | 99 | <- | Minus |
| arm_3L | 2477185..2477381 | 637..833 | 100 | <- | Minus |
| arm_3L | 2477690..2478076 | 180..566 | 100 | <- | Minus |
| arm_3L | 2478146..2478308 | 17..179 | 100 | | Minus |
BO34982.pep Sequence
Translation from 16 to 1564
> BO34982.pep
MWLTLITGALILLLTWDFGRKRQRVLAFEKSAIPGPISIPILGCGLQALH
LGAENIIGWVGEKFDKYGKTFRFWILGESLIYTKDLQYFETILSSTTLLE
KGQLYEYLRPFLNDGLLVSTGRKWHARRKIFTHAFHFKVLEHYVEIMDRH
SSVMVDNLRKVADGKTAVDMLKYVSLAALDVITEAAMGVQVNAQNDPDFP
YIKALKSVVYIQPDRMFRFSRRYNWLFPLAAPLLHRQLLSDIRVMHDFTD
KVISERRETVRRAKADGTYRPLSLGDAEIGSKSQMALLDILLQSSINNQP
LSDADIREEVDTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQRVL
GPDASAPVTQAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKT
IPANTSIYLVLYYAHRDANYFPDPLSFRPERFLEDQEQGHNTFAYVPFSA
GPKNCIGQKFAVLEMKVLISKVLRFYELLPLGEELKPMLNFILRSASGIN
VGLRPRKALRASFLDH
BO34982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d20-PA | 510 | CG16761-PA | 1..510 | 1..510 | 2633 | 100 | Plus |
| Cyp4d21-PA | 511 | CG6730-PA | 1..511 | 1..510 | 1708 | 64.6 | Plus |
| Cyp4d14-PA | 507 | CG3540-PA | 1..505 | 1..506 | 1186 | 46.6 | Plus |
| Cyp4d2-PB | 501 | CG3466-PB | 8..500 | 5..506 | 1173 | 47.9 | Plus |
| Cyp4d2-PA | 501 | CG3466-PA | 8..500 | 5..506 | 1173 | 47.9 | Plus |
