BO34986.complete Sequence
1882 bp assembled on 2014-07-07
GenBank Submission: KX798962
> BO34986.complete
GAAGTTATCAGTCGACATGTTGGATGCCAACAAAGATGGCTTCATCGATC
TGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGCTTCAAGCTGGCCGGC
TACCAGGTGCGCGAAATGATTGACGAGTACAAGGGCAAACAGCTGACTGC
CTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGGCACTGTGCCTGGACC
TGAAGAGCAAGGATGTGGCCAGCACATTCAAGACGGTCGTCTCCAAGAAG
GAGAACTTGGAGACCCTGGGCGGCATGTCGAGCATTTCGTCGGAGGGCAC
CACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCTTCTCCGACTGGATTA
ACTCGAATCTGGGCCACGACAAGGATCTGCAACATCTGCTGCCCATCGAT
AGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGATGGTATTCTGCTGTG
CAAAATTATCAACCACTCCTGCCCGGACACAATCGATGAGCGTGCGATCA
ACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAGAACTTGACCCTGGCC
TTGGTTTCCTCCCAGGCGATTGGATGCAACATCGTAAACATCGATGCCCA
CGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGGGTCTTCTCTGGCAGA
TCATCCGCATCGGTCTGTTTAGCCACATCACCCTGGACAGCTGTCCGGGA
TTGGCTGGCCTACTCTTCGACAACGAACGTCTCGAGGATCTGATGAAGAT
GTCGCCGGAGGCCATCCTTTTGCGTTGGGTCAACCATCATTTGGAGCGAG
CCGGCATCTCGAGGCGGTGCACCAACTTCCAGTCGGACATCGTCGATTCT
GAGATCTATTCGCATTTGCTGAAGCAAATTGCCGGCAATGATGCTGATGT
CAATCTGGATGCCCTGCGGGAATCCGATCTGCAGTCGCGCGCGGAGATCA
TGTTGCAGCAGGCCGCCAAGCTCAACTGCCGCAGCTTCCTCACGCCACAG
GATGTCGTCAACGGAGTCTACAAACTCAATCTAGCCTTCGTGGCTAATCT
GTTCAACAACCATCCAGGATTGGACAAGCCCGAGCAGATCGAGGGACTCG
AGTCCATTGAGGAGACGCGCGAAGAGAAGACCTACCGCAATTGGATGAAC
TCAATGGGCGTGGCACCGCACGTGAACTGGCTTTACTCCGATTTGGCCGA
TGGTCTGGTCATTTTCCAGCTGTTCGACGTCATCAAGCCGGGTATTGTCA
ACTGGAGCCGTGTGCACAAGCGTTTCAGCCCGCTGCGCAAGTTCATGGAA
AAGCTGGAGAACTGCAACTATGCGGTGGATCTGGGCAAGCAGCTCAAATT
CTCGCTGGTCGGAATCGCAGGCCAGGATCTAAACGATGGCAATGCCACGC
TGACGTTGGCTCTCATCTGGCAGCTTATGCGTGCCTACACCCTGTCCATT
CTGTCCCGCTTGGCCAACACTGGCAACCCCATTATCGAGAAGGAGATCGT
CCAGTGGGTGAATAACCGACTGTCGGAGGCAGGCAAACAGTCGCAGCTGC
GTAACTTCAACGATCCGGCCATCGCCGATGGCAAGATCGTGATCGATCTG
ATCGATGCCATCAAGGAGGGCAGCATTAACTACGAGTTGGTGCGCACTAG
CGGAACACAGGAGGATAACCTGGCCAATGCCAAGTATGCCATCTCCATGG
CCCGCAAGATCGGCGCCCGTGTCTACGCCCTGCCCGAGGACATCACCGAG
GTGAAGCCGAAAATGGTGATGACCGTTTTCGCCTGCATGATGGCCCTCGA
CTACGTGCCCAACATGGACAGTGTGGACCAGAACAACCACAACAGCTCCG
CCAACAACAGCAATGCAAGCTTTCTAGACCAT
BO34986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RC | 1851 | CG8649-PC | 1..1848 | 17..1864 | 9240 | 100 | Plus |
| Fim-RA | 1923 | CG8649-PA | 75..1920 | 19..1864 | 9230 | 100 | Plus |
| Fim-RD | 1926 | CG8649-PD | 79..1923 | 20..1864 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RC | 3269 | CG8649-RC | 450..2297 | 17..1864 | 9240 | 100 | Plus |
| Fim-RA | 3387 | CG8649-RA | 570..2415 | 19..1864 | 9230 | 100 | Plus |
| Fim-RD | 3236 | CG8649-RD | 420..2264 | 20..1864 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17287927..17289038 | 1130..19 | 5560 | 100 | Minus |
| X | 23542271 | X | 17287256..17287534 | 1409..1131 | 1395 | 100 | Minus |
| X | 23542271 | X | 17286936..17287191 | 1664..1409 | 1280 | 100 | Minus |
| X | 23542271 | X | 17286676..17286878 | 1864..1662 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:09:46 has no hits.
BO34986.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-07 10:51:35 Download gff for
BO34986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RC | 455..2297 | 22..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:32:46 Download gff for
BO34986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RC | 455..2297 | 22..1866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:32:46 Download gff for
BO34986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17287256..17287534 | 1131..1409 | 100 | <- | Minus |
| X | 17287927..17289035 | 22..1130 | 100 | | Minus |
| X | 17286937..17287190 | 1410..1663 | 100 | <- | Minus |
| X | 17286674..17286876 | 1664..1866 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-07 10:51:35 Download gff for
BO34986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17180970..17181223 | 1410..1663 | 100 | <- | Minus |
| arm_X | 17181289..17181567 | 1131..1409 | 100 | <- | Minus |
| arm_X | 17180707..17180909 | 1664..1866 | 99 | <- | Minus |
| arm_X | 17181960..17183068 | 22..1130 | 100 | | Minus |
BO34986.pep Sequence
Translation from 16 to 1882
> BO34986.pep
MLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKL
NLEEFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVR
LEEQLAFSDWINSNLGHDKDLQHLLPIDSEGKRLYLSIKDGILLCKIINH
SCPDTIDERAINKKNLTVYREFENLTLALVSSQAIGCNIVNIDAHDLAKG
KPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPEAI
LLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIAGNDADVNLDAL
RESDLQSRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHP
GLDKPEQIEGLESIEETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIF
QLFDVIKPGIVNWSRVHKRFSPLRKFMEKLENCNYAVDLGKQLKFSLVGI
AGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPIIEKEIVQWVNN
RLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSGTQED
NLANAKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMMALDYVPNM
DSVDQNNHNSSANNSNASFLDH
BO34986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-PC | 616 | CG8649-PC | 1..616 | 1..616 | 3169 | 100 | Plus |
| Fim-PD | 641 | CG8649-PD | 27..641 | 2..616 | 3164 | 100 | Plus |
| Fim-PA | 640 | CG8649-PA | 26..640 | 2..616 | 3164 | 100 | Plus |
