BO34994.complete Sequence
610 bp assembled on 2013-12-04
GenBank Submission: KX794173
> BO34994.complete
GAAGTTATCAGTCGACATGTTTGCACTTTCTGCTCGCCACGCACTGCGGC
GCACTCGAATATTCGCCATTCCACGCTTTTTCGCAGATTCACGCCAAGAC
AGCGACAATCCGGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAA
CAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGA
CCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTC
ACAGGTTGCTACAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGT
GTGCCACCAGGATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCG
GATGGCCGGCCTTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCAC
CGCGATGCCAGCATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCG
ATGCTCCGCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGC
ATCGACGCTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCG
ACGCCATCGAAGGCGGATCCATCGACGGCCTCGTCCAAGAAAGCAAGCTT
TCTAGACCAT
BO34994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RJ | 579 | CG6584-PJ | 1..576 | 17..592 | 2880 | 100 | Plus |
SelR-RH | 453 | CG6584-PH | 1..450 | 143..592 | 2250 | 100 | Plus |
SelR-RC | 594 | CG6584-PC | 1..527 | 17..543 | 2170 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RJ | 2392 | CG6584-RJ | 250..825 | 17..592 | 2880 | 100 | Plus |
SelR-RH | 2277 | CG6584-RH | 201..710 | 83..592 | 2550 | 100 | Plus |
SelR-RG | 2298 | CG6584-RG | 201..731 | 83..592 | 2305 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10865454..10865628 | 592..418 | 875 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 256..84 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866528..10866698 | 420..250 | 855 | 100 | Minus |
3R | 32079331 | 3R | 10867972..10868041 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:37:39 has no hits.
BO34994.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:20 Download gff for
BO34994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RJ | 256..825 | 23..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:43 Download gff for
BO34994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RJ | 256..825 | 23..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:43 Download gff for
BO34994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10866529..10866693 | 255..419 | 100 | <- | Minus |
3R | 10866809..10866976 | 87..254 | 100 | <- | Minus |
3R | 10867972..10868035 | 23..86 | 100 | | Minus |
3R | 10865452..10865626 | 420..594 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:20 Download gff for
BO34994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6692251..6692415 | 255..419 | 100 | <- | Minus |
arm_3R | 6692531..6692698 | 87..254 | 100 | <- | Minus |
arm_3R | 6693694..6693757 | 23..86 | 100 | | Minus |
arm_3R | 6691174..6691348 | 420..594 | 98 | <- | Minus |
BO34994.pep Sequence
Translation from 16 to 610
> BO34994.pep
MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV
TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL
FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM
GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKKASFLDH
BO34994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-PJ | 192 | CG6584-PJ | 1..192 | 1..192 | 1033 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 1..192 | 1..193 | 906 | 87 | Plus |
SelR-PE | 208 | CG6584-PE | 1..203 | 1..193 | 892 | 82.8 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 43..192 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 43..192 | 799 | 95.5 | Plus |