Clone BO35019 Report

Search the DGRC for BO35019

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:350
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG7903-RA
Protein status:BO35019.pep: Imported from assembly
Sequenced Size:1186

Clone Sequence Records

BO35019.complete Sequence

1186 bp assembled on 2013-12-04

GenBank Submission: KX798843

> BO35019.complete
GAAGTTATCAGTCGACATGAATACTACCGCCAAGGTGTTCGTCGGCAGCC
TGCCGCGCTGCAAGCCGGAGGAGCTGCGTCGACTGTTCACCAACTATGGA
TCGGTCGTTGAGTGCGACGTGATGAATCGCTGCGCCTTCGTCCATCTGGA
GAACACGGACATGGCGGAGGCGGCCATCGCAGCGCTGAATGGCACCATCT
TCAAGGGCCAGCCCATTGTGGTGGAGGCGGGCAGGCCAAAGTACGGCCCG
GGAGGTGGCAGTCGAGGTCAGCCGGGCTCTGGGGACAATCCGGGGCGCAG
GCCCTCGCAGGTTCAAGGTGGCGGGGCGGACAAGAGACCTCATGAATCCA
ATACCAACTTCAAGCGCAACTTTCGTGAGGAAGTCGGTGGCAGATTCTCC
AACGAAGGCCCAAGGAGCTCGAACTCCTCGGCCGCCAAATTTGGTCCCGT
GAGAAACGAGTCCAACTACAGACAACAGCGCAGTGCTCCATACTCGAAAG
GACCACCGAACAATGAGTCTTCCAATCAGGGACAGGGCTTTAGGAACAAA
TTTGCAGGCGGAGGCAAGTTCGGTGGAAGCGCGGGCAACGAGGGACGCTT
CGGCAGCAATCGGTTTCAGCAGCGGGACAACAGTGGACCACAGCCTGGCA
GAAGAAACTTTAAGAACAGTCCAACCAGCGGATATAGGGGAGGAGGCAAT
AATAGTGACTTTCAGGGAGGCAGCTCCAGCAGCGGGGGAGGAGGATCCGT
AAATCAGAGGGCCGGCGGCGGCGGCCCAGGTCCAAGCCATGTGCGACAGG
ATCGACGTGGATTTGCCCTGCCTGTAGAGCATCAGCAGCAGCAAATGGGC
TTCGGACGCTTTGGCAATGGACCAATGAACTCTGGCAATCGTGGGACTAA
TGGAGGAAATCCACCGGGAGGACGTGGATTTTTCAATGGAGGAGGGGGCG
GATTCAATGACAGACGCGATAGCAGTCACGAGACAAGCAGTCCCCAAGGA
GGCCCAAGCAAACGCGGAGGTTCAGGAGGTAGAAATCACAATCAGAATGG
CATAAATGCATATCACTCGGAGTTCCCGCCCTTGGGCAGTGGCGGCGGAG
GTCCAGGCCAAAGAAACCGCTTCAACGGGCCCAGACCCGGGCCAAATATG
GGCGGCAATAGAAGATTTGCAAGCTTTCTAGACCAT

BO35019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7903-RA 1155 CG7903-PA 1..1152 17..1168 5745 99.9 Plus
CG7903-RB 1149 CG7903-PB 1..1146 17..1168 5620 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7903-RA 1515 CG7903-RA 72..1225 15..1168 5755 99.9 Plus
CG7903-RB 1509 CG7903-RB 72..1219 15..1168 5630 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29994148..29994740 903..311 2965 100 Minus
3R 32079331 3R 29994793..29995078 311..26 1430 100 Minus
3R 32079331 3R 29993873..29994089 1119..903 1070 99.5 Minus
3R 32079331 3R 29993765..29993814 1168..1119 250 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:37:58 has no hits.

BO35019.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:27 Download gff for BO35019.complete
Subject Subject Range Query Range Percent Splice Strand
CG7903-RA 74..1225 17..1170 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:53 Download gff for BO35019.complete
Subject Subject Range Query Range Percent Splice Strand
CG7903-RA 74..1225 17..1170 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:53 Download gff for BO35019.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29994793..29995078 26..311 100   Minus
3R 29993763..29993813 1120..1170 96 <- Minus
3R 29993873..29994088 904..1119 99 <- Minus
3R 29994148..29994739 312..903 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:27 Download gff for BO35019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25820515..25820800 26..311 100   Minus
arm_3R 25819485..25819535 1120..1170 96 <- Minus
arm_3R 25819595..25819810 904..1119 99 <- Minus
arm_3R 25819870..25820461 312..903 100 <- Minus

BO35019.pep Sequence

Translation from 16 to 1186

> BO35019.pep
MNTTAKVFVGSLPRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMA
EAAIAALNGTIFKGQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQ
GGGADKRPHESNTNFKRNFREEVGGRFSNEGPRSSNSSAAKFGPVRNESN
YRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSAGNEGRFGSNRF
QQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSSSSGGGGSVNQRAG
GGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGNPP
GGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINAYH
SEFPPLGSGGGGPGQRNRFNGPRPGPNMGGNRRFASFLDH

BO35019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7903-PA 384 CG7903-PA 1..384 1..384 2103 100 Plus
CG7903-PB 382 CG7903-PB 1..382 1..384 2081 99.5 Plus
Cpr47Ef-PC 612 CG13214-PC 285..574 76..368 210 31.1 Plus
CG5787-PB 950 CG5787-PB 50..384 76..387 204 27.3 Plus
CG5787-PA 950 CG5787-PA 50..384 76..387 204 27.3 Plus
Cpr47Ef-PC 612 CG13214-PC 234..519 78..380 170 30.3 Plus
Cpr47Ef-PC 612 CG13214-PC 379..598 70..380 164 25.2 Plus
CG5787-PB 950 CG5787-PB 176..458 87..373 160 28.1 Plus