BO35036.complete Sequence
1033 bp assembled on 2013-12-04
GenBank Submission: KX797609
> BO35036.complete
GAAGTTATCAGTCGACATGGGTAAAGATCGACTGCCCGAGCTTTTGCAGC
GCTCATTGAGCACGAACTCGTCGAACTCGTCGTCGAACGGTTCACTGCTT
TTGAACGTGTACAGTGGAACCACGGAGTTCATCATTGGCAACACCGGCGG
TAACAATAATAGCTACAGTGTCGTTAGCCAAAACTCTCACAGCTGCAGCA
ACAATAACAGCAGCACCGAACCCAAGGATCGGTCCAGTTCAAAGATGACG
CAGTATGGCTCGAATGTGGATGACATACTCAATCCGTACACGGAGATTCG
CCAACAACTCGCACAGATAGCCGCCAACTTGGAGACGATGAACCGCATGG
CCCAAACTGTCAATCTGCGAACTTTCAACGAGAACGAGATGGATGAGCTT
CACAACAAAAACCTGAGGCTGGGCAATCAGCTAATGACGCGATTCAACGA
CTTCAAGGCGAATCTGCCGGCGGAAAACGATTACAGCTTGGAGGCAAGGA
TGAAAAGAACCCTTTTCTATGGACTCCACCAGACTTTCATCAATCTGTGG
CACAAAAACGAACTATTCCTGCAGAACTACGAGACCAAGGTCAAAAAGAA
TCTGAGACTGCATACAAAAATCATTAATTCTGAAGCCAGCGAACAAGAAA
TCGAGTTACTCATCGAGAACAAGACAACCAAACTCTTTGTGGATAATTTT
CTGCAGGAAACGGAAAAGGAGCGGCAGACACTGCGCGAAATGATGGATCG
ATTCAACGAGCTGCGCCGCCTGGAGAAGTCCATCGAGGAGGTGCACGCCC
TGTTCATGCGCATCCAGACCCTGGTAATGGAGCAGAGCGAGGTGATCCAG
CGGGTGGAGTTTCACGCCCAGCAGGCCACGCTCCACGTGGACAAGGGCGC
CGACGAGCTGGACCAGGCGGAGCAGCACCAGAAGAAGGCGCGCAAGAAAA
AGATAATGCTCATCGTGATACTCGCAGCCGTGTTGCTAGTATTACTCCTT
GTTGGTATTTATTTGGCAAGCTTTCTAGACCAT
BO35036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx4-RA | 1002 | CG2715-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Syx4-RB | 774 | CG2715-PB | 1..771 | 245..1015 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx4-RA | 1667 | CG2715-RA | 594..1592 | 17..1015 | 4995 | 100 | Plus |
Syx4-RB | 1083 | CG2715-RB | 43..1008 | 50..1015 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2739297..2739545 | 946..698 | 1245 | 100 | Minus |
X | 23542271 | X | 2741585..2741832 | 627..380 | 1225 | 99.6 | Minus |
X | 23542271 | X | 2742561..2742800 | 286..47 | 1200 | 100 | Minus |
X | 23542271 | X | 2741898..2741992 | 380..286 | 475 | 100 | Minus |
X | 23542271 | X | 2741423..2741496 | 697..624 | 370 | 100 | Minus |
X | 23542271 | X | 2739164..2739234 | 1015..945 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:38:02 has no hits.
BO35036.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:30 Download gff for
BO35036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx4-RA | 594..1592 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:55 Download gff for
BO35036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx4-RA | 594..1592 | 17..1017 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:55 Download gff for
BO35036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2739161..2739232 | 947..1017 | 97 | <- | Minus |
X | 2739297..2739545 | 698..946 | 100 | <- | Minus |
X | 2741423..2741496 | 624..697 | 100 | <- | Minus |
X | 2741589..2741831 | 381..623 | 100 | <- | Minus |
X | 2741898..2741991 | 287..380 | 100 | <- | Minus |
X | 2742561..2742797 | 50..286 | 100 | <- | Minus |
X | 2743451..2743483 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:30 Download gff for
BO35036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2633194..2633265 | 947..1017 | 97 | <- | Minus |
arm_X | 2633330..2633578 | 698..946 | 100 | <- | Minus |
arm_X | 2635456..2635529 | 624..697 | 100 | <- | Minus |
arm_X | 2635622..2635864 | 381..623 | 100 | <- | Minus |
arm_X | 2635931..2636024 | 287..380 | 100 | <- | Minus |
arm_X | 2636594..2636830 | 50..286 | 100 | <- | Minus |
arm_X | 2637484..2637516 | 17..49 | 100 | | Minus |
BO35036.pep Sequence
Translation from 16 to 1033
> BO35036.pep
MGKDRLPELLQRSLSTNSSNSSSNGSLLLNVYSGTTEFIIGNTGGNNNSY
SVVSQNSHSCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQ
IAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFKANL
PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHT
KIINSEASEQEIELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELR
RLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATLHVDKGADELDQ
AEQHQKKARKKKIMLIVILAAVLLVLLLVGIYLASFLDH
BO35036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx4-PA | 333 | CG2715-PA | 1..333 | 1..333 | 1676 | 100 | Plus |
Syx4-PB | 257 | CG2715-PB | 1..257 | 77..333 | 1292 | 100 | Plus |
Syx1A-PA | 291 | CG31136-PA | 14..286 | 65..337 | 271 | 23.9 | Plus |
Syx1A-PB | 296 | CG31136-PB | 14..286 | 65..337 | 271 | 23.9 | Plus |
Syx7-PB | 282 | CG5081-PB | 24..278 | 96..332 | 175 | 25 | Plus |