Clone BO35036 Report

Search the DGRC for BO35036

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:350
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptSyx4-RA
Protein status:BO35036.pep: Imported from assembly
Sequenced Size:1033

Clone Sequence Records

BO35036.complete Sequence

1033 bp assembled on 2013-12-04

GenBank Submission: KX797609

> BO35036.complete
GAAGTTATCAGTCGACATGGGTAAAGATCGACTGCCCGAGCTTTTGCAGC
GCTCATTGAGCACGAACTCGTCGAACTCGTCGTCGAACGGTTCACTGCTT
TTGAACGTGTACAGTGGAACCACGGAGTTCATCATTGGCAACACCGGCGG
TAACAATAATAGCTACAGTGTCGTTAGCCAAAACTCTCACAGCTGCAGCA
ACAATAACAGCAGCACCGAACCCAAGGATCGGTCCAGTTCAAAGATGACG
CAGTATGGCTCGAATGTGGATGACATACTCAATCCGTACACGGAGATTCG
CCAACAACTCGCACAGATAGCCGCCAACTTGGAGACGATGAACCGCATGG
CCCAAACTGTCAATCTGCGAACTTTCAACGAGAACGAGATGGATGAGCTT
CACAACAAAAACCTGAGGCTGGGCAATCAGCTAATGACGCGATTCAACGA
CTTCAAGGCGAATCTGCCGGCGGAAAACGATTACAGCTTGGAGGCAAGGA
TGAAAAGAACCCTTTTCTATGGACTCCACCAGACTTTCATCAATCTGTGG
CACAAAAACGAACTATTCCTGCAGAACTACGAGACCAAGGTCAAAAAGAA
TCTGAGACTGCATACAAAAATCATTAATTCTGAAGCCAGCGAACAAGAAA
TCGAGTTACTCATCGAGAACAAGACAACCAAACTCTTTGTGGATAATTTT
CTGCAGGAAACGGAAAAGGAGCGGCAGACACTGCGCGAAATGATGGATCG
ATTCAACGAGCTGCGCCGCCTGGAGAAGTCCATCGAGGAGGTGCACGCCC
TGTTCATGCGCATCCAGACCCTGGTAATGGAGCAGAGCGAGGTGATCCAG
CGGGTGGAGTTTCACGCCCAGCAGGCCACGCTCCACGTGGACAAGGGCGC
CGACGAGCTGGACCAGGCGGAGCAGCACCAGAAGAAGGCGCGCAAGAAAA
AGATAATGCTCATCGTGATACTCGCAGCCGTGTTGCTAGTATTACTCCTT
GTTGGTATTTATTTGGCAAGCTTTCTAGACCAT

BO35036.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Syx4-RA 1002 CG2715-PA 1..999 17..1015 4995 100 Plus
Syx4-RB 774 CG2715-PB 1..771 245..1015 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Syx4-RA 1667 CG2715-RA 594..1592 17..1015 4995 100 Plus
Syx4-RB 1083 CG2715-RB 43..1008 50..1015 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2739297..2739545 946..698 1245 100 Minus
X 23542271 X 2741585..2741832 627..380 1225 99.6 Minus
X 23542271 X 2742561..2742800 286..47 1200 100 Minus
X 23542271 X 2741898..2741992 380..286 475 100 Minus
X 23542271 X 2741423..2741496 697..624 370 100 Minus
X 23542271 X 2739164..2739234 1015..945 355 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:38:02 has no hits.

BO35036.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-12-04 09:59:30 Download gff for BO35036.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 594..1592 17..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:55 Download gff for BO35036.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 594..1592 17..1017 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:55 Download gff for BO35036.complete
Subject Subject Range Query Range Percent Splice Strand
X 2739161..2739232 947..1017 97 <- Minus
X 2739297..2739545 698..946 100 <- Minus
X 2741423..2741496 624..697 100 <- Minus
X 2741589..2741831 381..623 100 <- Minus
X 2741898..2741991 287..380 100 <- Minus
X 2742561..2742797 50..286 100 <- Minus
X 2743451..2743483 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-12-04 09:59:30 Download gff for BO35036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2633194..2633265 947..1017 97 <- Minus
arm_X 2633330..2633578 698..946 100 <- Minus
arm_X 2635456..2635529 624..697 100 <- Minus
arm_X 2635622..2635864 381..623 100 <- Minus
arm_X 2635931..2636024 287..380 100 <- Minus
arm_X 2636594..2636830 50..286 100 <- Minus
arm_X 2637484..2637516 17..49 100   Minus

BO35036.pep Sequence

Translation from 16 to 1033

> BO35036.pep
MGKDRLPELLQRSLSTNSSNSSSNGSLLLNVYSGTTEFIIGNTGGNNNSY
SVVSQNSHSCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQ
IAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFKANL
PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHT
KIINSEASEQEIELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELR
RLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATLHVDKGADELDQ
AEQHQKKARKKKIMLIVILAAVLLVLLLVGIYLASFLDH

BO35036.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Syx4-PA 333 CG2715-PA 1..333 1..333 1676 100 Plus
Syx4-PB 257 CG2715-PB 1..257 77..333 1292 100 Plus
Syx1A-PA 291 CG31136-PA 14..286 65..337 271 23.9 Plus
Syx1A-PB 296 CG31136-PB 14..286 65..337 271 23.9 Plus
Syx7-PB 282 CG5081-PB 24..278 96..332 175 25 Plus