BO35044.complete Sequence
2164 bp assembled on 2014-03-03
GenBank Submission: KX798323
> BO35044.complete
GAAGTTATCAGTCGACATGCTATCCCAATACATGGAGGAGTTTGAACAGG
AACCCTTTGAGGTGGGCGAGTTCATAGAGCGTCTGACTTGGCGCACCAAC
AATGAACTCCAGAACAGCGAGGACTTTCATCCTGTGGCCCTCCACGATAC
CTTCATCCAGACCATTAAGGACCTAAAGATCCTGCAGGAGAAGCAACAAA
GCAAGTGCGAACGGCTAGAGGAGTCACTGCGCCAGGAGAAGGAGTCGCAC
GCCAAAAAGATTGCCAAGCTCCAAGAACGCCACCAAACGGCCATTGATGT
GTTCGGCCAGCTGGACGAAAAAATCAATTCGGTGGCCGGCAAGATCATGC
ACCTGGGCGAACAGTTGGAGAATGTGAACACTCCACGCAGTCGTTCAGTG
GAGGCCCAGAAGTTACTCAATTTTATGTCCGAGTTTTTAGCCGCTGGCCC
TGTGATTGTCAACGATATTTTTGCGGATGCCGCAAGATTAAGTGAGGCCG
CAGATGTGATACAAAAGCTCTACGCTATCTCGCAGGATCTGCCGCCCGGA
AACTTTGCGGAATCCAAAAGAAAAATCGAAAAGAAATACGATGAAGTCGA
GCGGCGGTTGATCGAAGAGTTTGCCACCGCCCAGAAGAGCGAGGACATCG
AGCGCATGAAGACACTGGCCCAGATCTTGTCCCAGTTCAAGGGTTACACT
CAGTGTGTAGACGCATACATCGAGCAGAGCCAAATGCAACCGTACAGTGG
CAAAGACATATTTATAGGCATTGTACCGCTATGCAAGCATCACTACGAGA
TAATCCAGAAGGTGTTTGCCAATCCGCAGCAGGTTATGTCCAAGTTCATA
CTTAACATATATCAACTGAAGCTTCACCAGTACGCCATGACTAAGTTGGA
GGACAAAAAAGACGAGGAGAAATATCTTCGCACCCTTTATGAGTTATACT
CGCGCACACTAAAATTGTCAACAGATCTTCAAATCTACATGTCCACGATC
GACGACGACTTGTTACAGAAGCTGACACAGCAGATTTTTATAAAGCATTT
GGCCGGCTACGCCGAAATGGAGACCAAATGCCTCACAGCCAAGTGTTCCA
CAGAGCTGGAAAAGTTCTATGCCAGCAAGAAACACCAAAAGACTGCAACT
ACTAAGGGCTTTCGGAGAAACATGGAGGTGCTGATAGCCACGCGGGCTAA
CATAAATATTGCTGCCATCGAGGACTATGGCGGGGAGACGTTCCTATCCG
AAGAGTTGGCCATCAACATGCTGCAGGAGGCCAAGGCGTCGCTTAAGCGC
TGTCGCCTGCTGTCCAACGAGACCGAACTACCAGGCAATGCTATAAAGCT
AAACGATATCCTTCTTCGTTTCTTGATGCACGAGCACGTAGATTACGCAC
TGGAGTTGGGACTGCAAGCAGTGCCACTGGCCGAGGGCAGGGTCTTTCCC
CAGCTCTACTTCTTTGATGTGGTGCAAAAGACGAACATCATTGTCCATCT
ACTGGACAAGCTGTGCCACACATCTGTCATACCCTGTGTGAGTAATACAC
CCAAGTACTCGGACTATGTGTTCAAAAAACGTATTCTGATGGAGCAAATC
GAGACAAAGCTGGACCAGGGTCTTGATCGCTCTATTAGCGCTGTTATTGG
CTGGGTCAAGGTATATTTGCAATATGAACAAAAGAAAACGGACTACAAGC
CGGAAACAGATGTGGATACAATATCTTCAGCGGCCTGCTTACAAGTCGTT
CAGAATCTGCAGCCCGTGATTGTGCAGATTAAAAAATGTGTTGATGGAGA
GAATTTGCAGAATGTTCTTACAGAATTTGGAACTCGGTTGCACCGAGTAA
TCTACGATCACCTGCAGACCATGCAGTTCAACACGGCTGGCGCCATGTGT
GCCATCTGCGACGTGAACGAGTATCGCAAGTGCATTCGCGAGCTGGATAG
TCCACTGGTCACGCAGCTGTTTGACATACTGCATGCATTGTGCAATTTAC
TACTTGTTAAGCCCCAAAACCTTCAAGAAGTTTGCACGGGTGACACTCTG
AATTATCTGGACAAGTCGGTGGTGCGGCAATTCATTCAGCTGCGCACTGA
TTTCAGGATCATCAAGAACACCAACTATCTGAAGGGTATTATTGAGGCAA
GCTTTCTAGACCAT
BO35044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec10-RA | 2133 | CG6159-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec10-RA | 2380 | CG6159-RA | 84..2213 | 17..2146 | 10650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24135002..24135911 | 45..954 | 4550 | 100 | Plus |
| 3R | 32079331 | 3R | 24135980..24136568 | 954..1542 | 2945 | 100 | Plus |
| 3R | 32079331 | 3R | 24136885..24137203 | 1732..2050 | 1595 | 100 | Plus |
| 3R | 32079331 | 3R | 24136625..24136817 | 1541..1733 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 24137275..24137371 | 2050..2146 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:04:58 has no hits.
BO35044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:06 Download gff for
BO35044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec10-RA | 84..2213 | 17..2148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:30:58 Download gff for
BO35044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec10-RA | 84..2213 | 17..2148 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:30:58 Download gff for
BO35044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24136627..24136816 | 1543..1732 | 100 | -> | Plus |
| 3R | 24134914..24134946 | 17..49 | 100 | -> | Plus |
| 3R | 24135007..24135911 | 50..954 | 100 | -> | Plus |
| 3R | 24135981..24136568 | 955..1542 | 100 | -> | Plus |
| 3R | 24136886..24137203 | 1733..2050 | 100 | -> | Plus |
| 3R | 24137276..24137371 | 2051..2148 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:06 Download gff for
BO35044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19960636..19960668 | 17..49 | 100 | -> | Plus |
| arm_3R | 19960729..19961633 | 50..954 | 100 | -> | Plus |
| arm_3R | 19961703..19962290 | 955..1542 | 100 | -> | Plus |
| arm_3R | 19962349..19962538 | 1543..1732 | 100 | -> | Plus |
| arm_3R | 19962608..19962925 | 1733..2050 | 100 | -> | Plus |
| arm_3R | 19962998..19963093 | 2051..2148 | 97 | | Plus |
BO35044.pep Sequence
Translation from 16 to 2164
> BO35044.pep
MLSQYMEEFEQEPFEVGEFIERLTWRTNNELQNSEDFHPVALHDTFIQTI
KDLKILQEKQQSKCERLEESLRQEKESHAKKIAKLQERHQTAIDVFGQLD
EKINSVAGKIMHLGEQLENVNTPRSRSVEAQKLLNFMSEFLAAGPVIVND
IFADAARLSEAADVIQKLYAISQDLPPGNFAESKRKIEKKYDEVERRLIE
EFATAQKSEDIERMKTLAQILSQFKGYTQCVDAYIEQSQMQPYSGKDIFI
GIVPLCKHHYEIIQKVFANPQQVMSKFILNIYQLKLHQYAMTKLEDKKDE
EKYLRTLYELYSRTLKLSTDLQIYMSTIDDDLLQKLTQQIFIKHLAGYAE
METKCLTAKCSTELEKFYASKKHQKTATTKGFRRNMEVLIATRANINIAA
IEDYGGETFLSEELAINMLQEAKASLKRCRLLSNETELPGNAIKLNDILL
RFLMHEHVDYALELGLQAVPLAEGRVFPQLYFFDVVQKTNIIVHLLDKLC
HTSVIPCVSNTPKYSDYVFKKRILMEQIETKLDQGLDRSISAVIGWVKVY
LQYEQKKTDYKPETDVDTISSAACLQVVQNLQPVIVQIKKCVDGENLQNV
LTEFGTRLHRVIYDHLQTMQFNTAGAMCAICDVNEYRKCIRELDSPLVTQ
LFDILHALCNLLLVKPQNLQEVCTGDTLNYLDKSVVRQFIQLRTDFRIIK
NTNYLKGIIEASFLDH
BO35044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec10-PA | 710 | CG6159-PA | 1..710 | 1..710 | 3629 | 100 | Plus |
