BO35052.complete Sequence
2476 bp assembled on 2014-07-30
GenBank Submission: KX799367
> BO35052.complete
GAAGTTATCAGTCGACATGGGTGACATGTTCCGCAGCGAGAAGATGGCCC
TGTGCCAGCTGTTCATCCAGCCGGAGGCAGCCTACGCCTCCATTGCCGAG
CTGGGCGAAAAAGGATGTGTCCAGTTTCGCGATCTGAACGAGGAGGTCAG
TGCTTTCCAGCGAAAGTACGTCAACGAGGTCAGGAGATGTGATGACATGG
AGCGCCGCCTCCGGTACGTGGAGTCCGAGATGAAGAAGGACGAGGTAAAG
CTGCCAGTCCTGCGACCGGAGGAGGAGCCCATTGCTCCCAATCCCCGCGA
GATCGTAGACCTTGAGGCTCAGCTGGAGAAGACCGACAATGAACTGCGCG
AAATGTCCGCCAATGGAGCGAGTTTGGATGCCAACTTCCGGCACATGCAA
GAACTCAAATACGTGCTAGAGAACACCGAGGGCTTCTTCTCCGATCAGGA
AGTCATTAATCTGGACGTCAACCGAAAACTGGACCCCGAGGATCCGGCCA
ATTTGCCAGGAGCCGCCCAGCGGGGTCAACTGGCCTTTGTTGCTGGTGTC
ATCAAGCTGGAGCGATTCTTCAGCTTTGAGCGCATGCTGTGGCGCATTTC
CAGAGGAAATATCTTCCTGCGGAGAGCCGACATTGATGGGCTCGTCGCCG
ATGAGGAAACTGGAAGGCCTGTACTAAAGACCGTCTTCGTGGCCTTCTTC
CAGGGAGAGCAGCTGAAGCAAAGAATCAAGAAAGTCTGCACGGGCTATCA
TGCCGCCGTCTATCCCTGTCCCAGTTCGCATGCCGAGCGAAAAGAGATGA
TCAAGGATGTGAATGTCCGTCTGGAGGACCTCAAGTTGGTCCTCAGCCAG
AGCGCCGATCATCGCAGCCGGGTTTTGAACTCAGCCTCTAAGCATTTGCC
ACGCTGGTCGATTATGGTGCGCAAAATGAAGGCTATCTATCACATTCTGA
ACTTCTTCAATCCCGATGTGACGGGCAAGTGTCTGATTGGCGAGGGTTGG
GTGCCCACCAACGATATATCCACGGTTCAGGATGCACTAGCTCGAGCCTC
GAAGATCTCGGAAAGTTCCATACCGGCATTCATGAATGTCATCGAGACGA
ACGAAATGCCGCCGACTTACACGAGAACCAATAAATTCACCAATGGCTTC
CAGAACCTGGTTGACTCGTATGGAATGGCCTCATATAGAGAAGTGAATCC
GGCTCTTTACGCCTGCATCACATTCCCCTTTCTGTTCGCCGTGATGTTCG
GTGACTTGGGACACGGACTGATCCTGCTGCTCTTCGCCTCCTGGCTAATC
ATCAAGGAAAAGCAATTGTCTTCGATCAAGGAGGAGATCTTCAACATATT
CTTCGGCGGCCGATACATCATCTTCCTCATGGGAATTTTCTCCATTTACA
CCGGATTCATTTACAACGATGTGTTCTCAAAGTCCATGAATATATTCGGC
TCCGCTTGGCACATGAACTATACAAGGGACGTGGTTGAGGATGAAAACCT
TAAATATATCACCCTCAGGCCGAACGATACTGTTTACAAGACATATCCCT
TCGGCATGGATCCCATTTGGCAACTGGCCGACAACAAGATCATCTTTCTA
AACACCTTTAAGATGAAGCTGTCGATCATTGTGGGTGTGATCCACATGAT
CTTCGGCGTCTCCATGTCGGTGGTTAACTTTGCCTACTACAAGAAGTACG
CAAGTATTTTCCTAGAGTTCCTGCCTCAAGTCCTGTTCCTTCTCCTGTTG
TTCGGTTACATGGTCTTCATGATGTTCTTCAAGTGGGTCGTTTACAACGA
CACCGTTGAAGGACCACTTTCACCGGCTTGTGCTCCTTCTATCCTGATCC
TGTTCATCAACATGATACTGCAGGGCAGCCAGGACACTCCTGAGCCCTGC
AAGGAGTTCATGTTCGACGGTCAGAAGAGCATCCAACAGGTCTTTGTCGT
CGTTGCCATCATTTGCATTCCTTGGATGCTTTTGGGCAAGCCTCTGTACA
TCATGATCAAACGCAAGACGAACGGAGCTCCCCCACCAAAACCACAAAGC
GGTGGAGGGGAGGGTCATGGAGAGGACGATGAGATGGGCGAGATCTTCAT
CCATCAGGCCATCCACACCATCGAATATGTCCTGAGTACGGTCTCCCACA
CGGCCTCATACCTCCGATTGTGGGCCTTATCCCTGGCTCACGCACAGCTC
TCCGAAGTACTGTGGAACATGGTGTTTTCCATGGGATTCAAGTACGACAG
CTATATTGGCGGCATTCTCATCTACGTATTCTTTGGAGCCTGGGCGTTGC
TCACAGTCGGTATCCTGGTGCTCATCGAAGGACTCTCGGCCTTCTTGCAC
ACACTGCGTTTGCACTGGGTTGAGTTCATGAGCAAGTTCTACGAGGGCGC
TGGTTACGCCTTTGAGCCTTTTGCCTTTAAGACCATTTTGGATGTCAGCG
AGGATGACGCAAGCTTTCTAGACCAT
BO35052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-5-RB | 2445 | CG12602-PB | 1..2442 | 17..2458 | 12210 | 100 | Plus |
| Vha100-5-RA | 2445 | CG12602-PA | 1..2442 | 17..2458 | 12210 | 100 | Plus |
| Vha100-2-RA | 2505 | CG18617-PA | 1516..1758 | 1544..1786 | 525 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-5-RB | 2918 | CG12602-RB | 109..2552 | 15..2458 | 12220 | 100 | Plus |
| Vha100-5-RA | 2686 | CG12602-RA | 109..2552 | 15..2458 | 12220 | 100 | Plus |
| Vha100-2-RA | 3044 | CG18617-RA | 1753..1995 | 1544..1786 | 525 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11741549..11743729 | 15..2195 | 10905 | 100 | Plus |
| 2L | 23513712 | 2L | 11743834..11744006 | 2196..2368 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 18391576..18391807 | 1775..1544 | 470 | 80.2 | Minus |
| 3R | 32079331 | 3R | 18392075..18392674 | 1276..677 | 465 | 71.8 | Minus |
| 2L | 23513712 | 2L | 11744067..11744158 | 2367..2458 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 18387812..18388048 | 1789..1553 | 420 | 78.5 | Minus |
| 3R | 32079331 | 3R | 18390642..18390806 | 2444..2280 | 300 | 78.8 | Minus |
| 3R | 32079331 | 3R | 29135940..29136068 | 1334..1462 | 270 | 80.6 | Plus |
| 3R | 32079331 | 3R | 18390964..18391073 | 2193..2084 | 265 | 82.7 | Minus |
| 3R | 32079331 | 3R | 18393273..18393388 | 132..17 | 250 | 81 | Minus |
| 3R | 32079331 | 3R | 18387274..18387381 | 2190..2083 | 240 | 81.5 | Minus |
| 3R | 32079331 | 3R | 18388766..18388921 | 832..677 | 225 | 76.3 | Minus |
| 3R | 32079331 | 3R | 18387017..18387117 | 2391..2291 | 220 | 81.2 | Minus |
| 3R | 32079331 | 3R | 29137181..29137266 | 2090..2175 | 205 | 82.6 | Plus |
| 3R | 32079331 | 3R | 29131721..29131829 | 29..137 | 200 | 78.9 | Plus |
| 3R | 32079331 | 3R | 18388331..18388471 | 1267..1127 | 195 | 75.9 | Minus |
| 3R | 32079331 | 3R | 18391905..18392011 | 1440..1334 | 190 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:14:38 has no hits.
BO35052.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-30 16:34:27 Download gff for
BO35052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-5-RA | 111..2552 | 17..2460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:30 Download gff for
BO35052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-5-RA | 111..2552 | 17..2460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:30 Download gff for
BO35052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11741551..11743729 | 17..2195 | 100 | -> | Plus |
| 2L | 11743834..11744005 | 2196..2367 | 100 | -> | Plus |
| 2L | 11744068..11744158 | 2368..2460 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-30 16:34:27 Download gff for
BO35052.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11741551..11743729 | 17..2195 | 100 | -> | Plus |
| arm_2L | 11743834..11744005 | 2196..2367 | 100 | -> | Plus |
| arm_2L | 11744068..11744158 | 2368..2460 | 97 | | Plus |
BO35052.pep Sequence
Translation from 16 to 2476
> BO35052.pep
MGDMFRSEKMALCQLFIQPEAAYASIAELGEKGCVQFRDLNEEVSAFQRK
YVNEVRRCDDMERRLRYVESEMKKDEVKLPVLRPEEEPIAPNPREIVDLE
AQLEKTDNELREMSANGASLDANFRHMQELKYVLENTEGFFSDQEVINLD
VNRKLDPEDPANLPGAAQRGQLAFVAGVIKLERFFSFERMLWRISRGNIF
LRRADIDGLVADEETGRPVLKTVFVAFFQGEQLKQRIKKVCTGYHAAVYP
CPSSHAERKEMIKDVNVRLEDLKLVLSQSADHRSRVLNSASKHLPRWSIM
VRKMKAIYHILNFFNPDVTGKCLIGEGWVPTNDISTVQDALARASKISES
SIPAFMNVIETNEMPPTYTRTNKFTNGFQNLVDSYGMASYREVNPALYAC
ITFPFLFAVMFGDLGHGLILLLFASWLIIKEKQLSSIKEEIFNIFFGGRY
IIFLMGIFSIYTGFIYNDVFSKSMNIFGSAWHMNYTRDVVEDENLKYITL
RPNDTVYKTYPFGMDPIWQLADNKIIFLNTFKMKLSIIVGVIHMIFGVSM
SVVNFAYYKKYASIFLEFLPQVLFLLLLFGYMVFMMFFKWVVYNDTVEGP
LSPACAPSILILFINMILQGSQDTPEPCKEFMFDGQKSIQQVFVVVAIIC
IPWMLLGKPLYIMIKRKTNGAPPPKPQSGGGEGHGEDDEMGEIFIHQAIH
TIEYVLSTVSHTASYLRLWALSLAHAQLSEVLWNMVFSMGFKYDSYIGGI
LIYVFFGAWALLTVGILVLIEGLSAFLHTLRLHWVEFMSKFYEGAGYAFE
PFAFKTILDVSEDDASFLDH
BO35052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-5-PB | 814 | CG12602-PB | 1..814 | 1..814 | 4245 | 100 | Plus |
| Vha100-5-PA | 814 | CG12602-PA | 1..814 | 1..814 | 4245 | 100 | Plus |
| Vha100-2-PA | 834 | CG18617-PA | 1..834 | 1..814 | 2862 | 65.3 | Plus |
| Vha100-2-PB | 834 | CG18617-PB | 1..834 | 1..814 | 2862 | 65.3 | Plus |
| Vha100-4-PA | 844 | CG7678-PA | 16..844 | 4..814 | 2481 | 56.4 | Plus |
